ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs10228350 dbSNP Ensembl
Location Chr7:114060663(Fwd)
Variant Alleles A/T
Ancestral Allele A
Functional Annotation NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000412402; ENST00000440349; ENST00000441290)
intron_variant(ENST00000412402; ENST00000440349; ENST00000441290; ENST00000324462; ENST00000393494; ENST00000350908; ENST00000495516; ENST00000462331; ENST00000408937; ENST00000393498; ENST00000393489; ENST00000459666; ENST00000378237; ENST00000403559; ENST00000393500)
nc_transcript_variant(ENST00000495516; ENST00000459666)
upstream_gene_variant(ENST00000415146)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Ribases, M., 2012 P-value=0.116 in 643 adult attention-deficit/hyperactivity d...... P-value=0.116 in 643 adult attention-deficit/hyperactivity disorder patients and and 619 unrelated controls from Germany; P-value=0.066, OR (95% CI)=- in 431 combined attention-deficit/hyperactivity disorder patients and 619 unrelated controls from Germany More... No significant association was found. No significant association was found. Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs10228350 (count: 24) View in gBrowse (chr7:114012911..114224163 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 2)

LD-proxies (count: 22)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014