ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1042098 dbSNP Ensembl
Location Chr5:1394815(Fwd)
Variant Alleles A/G
Ancestral Allele G
Functional Annotation 3_prime_UTR_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000512002; ENST00000270349; ENST00000453492)
No. of Studies 2 (significant: 1; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Brookes K, 2006 A/G UNPHASED TDT P-value=0.137; WHAP TDT P-value=0.044 UNPHASED TDT P-value=0.137; WHAP TDT P-value=0.044 significant association was observed in WHAP analysis significant association was observed in WHAP analysis Significant
Shang CY, 2011 T/C T allele FBAT P-value=0.131, Z=1.51 for total sample; T alle...... T allele FBAT P-value=0.131, Z=1.51 for total sample; T allele FBAT P-value=0.267, Z=1.109 for combined subtype; T allele FBAT P-value=0.577, Z=0.557 for inattentive subtype More... no significant associations in the total sample no significant associations in the total sample Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs1042098 (count: 4) View in gBrowse (chr5:1392711..1411412 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 3)

LD-proxies (count: 1)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014