ADHDgene Database

SNP Report

Basic Info

Name	rs10485813 dbSNP Ensembl
Location	Chr20:51583983(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000371497)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	A:G		P-value=8.20E-06 P-value=8.20E-06	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
TSHZ2	teashirt zinc finger homeobox 2	20q13.2

SNPs in LD with rs10485813 (count: 8) View in gBrowse (chr20:51556035..51585125 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs16997358		1(0/0/1)	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.895[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]

rs_ID	Functional Annotation	r²[population]
rs16997342		0.916[ASW]; 1.0[CEU]; 0.945[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.918[LWK]; 0.894[MEX]; 0.884[TSI]
rs16997340		1.0[ASW]; 1.0[CEU]; 0.945[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.973[LWK]; 0.898[MEX]; 1.0[MKK]; 0.884[TSI]; 0.944[YRI]
rs11906596	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs16997309		0.879[CEU]; 0.945[CHB]; 1.0[JPT]
rs13040133	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11908686	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs11905478		0.879[CEU]; 0.889[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.853[MEX]