SNP Report
Basic Info
Name |
rs1048953
dbSNP
Ensembl
|
Location |
Chr5:1438174(Fwd) |
Variant Alleles |
G/A |
Ancestral Allele |
G |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000453492; ENST00000270349; ENST00000513308) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 13)
rs_ID |
Functional Annotation |
r2[population] |
rs2962041
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs1048955
|
intron_variant |
1.0[JPT]
|
rs11564758
|
intron_variant; upstream_gene_variant |
0.901[CEU]
|
rs11750173
|
NMD_transcript_variant; downstream_gene_variant; intron_variant |
1.0[CHD]
|
rs17588991
|
NMD_transcript_variant; nc_transcript_variant; non_coding_exon_variant; synonymous_variant |
1.0[CHD]
|
rs4608970
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs11737901
|
intron_variant |
0.8[CEU]
|
rs13161905
|
intron_variant; upstream_gene_variant |
0.825[CEU]; 1.0[CHD]; 0.828[MEX]; 1.0[MKK]; 0.86[TSI]
|
rs12516758
|
downstream_gene_variant |
1.0[CHD]
|
rs4975646
|
intron_variant |
1.0[CHD]; 1.0[JPT]; 0.884[MEX]; 1.0[MKK]; 0.84[TSI]
|
rs11133792
|
NMD_transcript_variant; downstream_gene_variant; intron_variant |
1.0[CHD]
|
rs2963282
|
NMD_transcript_variant; intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs2963285
|
intron_variant; nc_transcript_variant |
1.0[CHD]
|