ADHDgene Database

SNP Report

Basic Info

Name	rs11079828 dbSNP Ensembl
Location	Chr17:46609103(Fwd)
Variant Alleles	T/G/A/C
Ancestral Allele	T
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000239174; ENST00000577092)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Stergiakouli E., 2012	T/C	T	P=0.00000654, OR=1.32, 95% CI=1.17-1.49 P=0.00000654, OR=1.32, 95% CI=1.17-1.49	One of the top 21 independent SNP in this ADHD GWAS. One of the top 21 independent SNP in this ADHD GWAS.	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
HOXB1	homeobox B1	17q21.32	1(0/0/1)

SNPs in LD with rs11079828 (count: 19) View in gBrowse (chr17:46558036..46643389 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs12450225		0.815[CEU]; 0.84[MEX]
rs1509638	downstream_gene_variant	0.914[CEU]
rs11079824		0.925[CEU]; 0.863[CHB]; 0.858[JPT]
rs2036764		0.812[CEU]
rs2740760	intron_variant	0.863[CHB]; 0.908[JPT]
rs11869101		0.815[CEU]
rs7501529		0.833[CEU]
rs11652125		0.808[CEU]
rs1553754		0.832[MEX]; 0.888[TSI]
rs10853100	downstream_gene_variant	0.847[CEU]; 0.84[MEX]
rs8077407	downstream_gene_variant	0.844[CEU]
rs4793927	intron_variant; nc_transcript_variant; upstream_gene_variant	0.814[JPT]
rs2325948		0.815[CEU]; 0.804[MEX]
rs11652746		0.815[CEU]
rs11079825		0.884[CEU]
rs11079826		0.815[CEU]; 0.84[MEX]
rs925284		0.815[CEU]; 0.837[MEX]
rs4793564		0.812[CEU]
rs11651168		0.815[CEU]; 0.84[MEX]