SNP Report
Basic Info
Name |
rs12110170
dbSNP
Ensembl
|
Location |
Chr5:52142544(Fwd) |
Variant Alleles |
T/A |
Ancestral Allele |
T |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000282588) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 11)
rs_ID |
Functional Annotation |
r2[population] |
rs6860395
|
intron_variant |
0.937[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs10513001
|
intron_variant |
0.874[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs7704305
|
intron_variant |
0.829[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs6886404
|
intron_variant; upstream_gene_variant |
0.933[CEU]; 1.0[CHB]; 1.0[JPT]; 0.96[YRI]
|
rs10038615
|
intron_variant |
0.933[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs6884370
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.875[CEU]; 0.938[CHB]; 1.0[JPT]; 0.844[YRI]
|
rs10513000
|
intron_variant |
0.874[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs10046016
|
intron_variant |
0.821[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs6895807
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs16880353
|
intron_variant |
0.933[CEU]; 1.0[CHB]; 1.0[JPT]; 0.961[YRI]
|
rs6894627
|
intron_variant |
0.937[CEU]; 1.0[CHB]; 1.0[JPT]
|