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ADHDgene Database
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Keyword:
Type:
SNP
Gene
Region
Pathway
Study(PMID)
Large-scale studies
Genome-wide Association Studies of ADHD
Genome-wide Linkage Studies of ADHD
Genome-wide CNV Analyses of ADHD
Meta-analysis Studies of ADHD
Data Summary
Published Variant
SNP:
1391
CNV:
398
Others:
173
Published Gene:
359
Published Region:
128
Pathway by PBA:
8
Study:
361
Detail ...
SNP Report
Basic Info
Name
rs1213371
dbSNP
Ensembl
Location
Chr6:78180045(Fwd)
Variant Alleles
T/C
Ancestral Allele
C
No. of Studies
1 (significant: 0; non-significant: 1; trend: 0)
Source
Literature-origin
SNP related studies (count: 1)
Reference
Allele Change
Risk Allele
Statistical Values
Author Comments
Result of Statistical Analysis
Ickowicz A, 2007
T/C
T
TDT P-value=0.312
TDT P-value=0.312
No evidence for biased transmission
No evidence for biased transmission
Non-significant
SNP related genes (count: 1)
Literature-origin genes (count: 1)
Approved Symbol
Approved Name
Location
No. of Studies (significant/non-significant/trend)
HTR1B
5-hydroxytryptamine (serotonin) receptor 1B
6q13
13(5/8/0)
Genes from other sources
(count: 0)
SNPs in LD with rs1213371 (count: 47)
View in gBrowse (chr6:78170062..78259610 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold
r
2
>=0.8.
Literature-origin SNPs (count: 1)
rs_ID
Functional Annotation
#studies(significant/non-significant/trend)
r
2
[population]
rs11568817
5_prime_UTR_variant
1(0/1/0)
0.845[CEU]; 1.0[CHB]; 0.846[JPT]
LD-proxies (count: 46)
rs_ID
Functional Annotation
r
2
[population]
rs9361235
upstream_gene_variant
0.842[CEU]; 1.0[CHB]; 1.0[CHD]; 0.868[GIH]; 0.846[JPT]; 0.874[MEX]; 0.955[TSI]
rs2609072
0.865[CHD]
rs1778267
0.865[CHD]
rs1213357
upstream_gene_variant
1.0[CHB]
rs2798506
0.801[GIH]
rs1458440
0.913[CHD]
rs2798976
0.861[CHD]
rs1674212
0.865[CHD]
rs2798956
0.913[CHD]
rs1419162
0.874[CHD]; 0.912[GIH]
rs1213380
0.913[CHD]
rs1625213
0.913[CHD]
rs1777753
0.913[CHD]; 0.912[GIH]
rs1778248
0.913[CHD]; 0.912[GIH]; 0.809[LWK]
rs1778245
0.913[CHD]
rs1213381
0.86[CHD]
rs2320724
0.913[CHD]; 0.891[GIH]; 0.809[LWK]
rs1361847
upstream_gene_variant
0.846[CHB]
rs2609067
0.865[CHD]
rs1213369
upstream_gene_variant
1.0[YRI]
rs2798509
downstream_gene_variant
0.913[CHD]
rs9352484
0.801[GIH]
rs1213366
upstream_gene_variant
1.0[ASW]; 0.923[CEU]; 1.0[CHB]; 1.0[CHD]; 0.846[JPT]; 0.935[LWK]; 0.957[MEX]; 0.828[MKK]; 1.0[TSI]; 1.0[YRI]
rs1936158
0.814[MKK]; 1.0[YRI]
rs1228814
upstream_gene_variant
0.845[CEU]
rs1777759
0.913[CHD]
rs9361233
downstream_gene_variant
1.0[CHB]; 0.846[JPT]
rs2609063
0.913[CHD]
rs17273700
upstream_gene_variant
0.845[CEU]; 1.0[CHB]; 0.846[JPT]
rs1623600
0.913[CHD]
rs2798975
0.865[CHD]
rs2798950
0.822[GIH]
rs1777784
0.913[CHD]
rs10943468
0.913[CHD]
rs1343484
0.913[CHD]
rs1213356
upstream_gene_variant
0.846[CHB]; 0.913[CHD]; 0.801[GIH]
rs9343616
0.801[GIH]
rs1213373
1.0[CEU]; 1.0[CHB]; 0.823[JPT]; 1.0[YRI]
rs1419088
0.913[CHD]
rs1545665
0.865[CHD]
rs2609060
0.913[CHD]
rs1539626
0.837[CHD]
rs1674203
0.913[CHD]
rs2798957
0.913[CHD]
rs1777785
0.913[CHD]
rs1777783
0.913[CHD]