ADHDgene Database

SNP Report

Basic Info

Name	rs12438177 dbSNP Ensembl
Location	Chr15:55951432(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000389286; ENST00000561465)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Wigg KG, 2008	C/T		TDT P-value=0.775, X²=0.082 TDT P-value=0.775, X²=0.082	no evidence for association no evidence for association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRTG	protogenin	15q21.3	1(1/0/0)

SNPs in LD with rs12438177 (count: 25) View in gBrowse (chr15:55944517..56044971 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs7162879	downstream_gene_variant; intron_variant	1(1/0/0)	0.864[CHB]
rs16976466	missense_variant; nc_transcript_variant; non_coding_exon_variant; splice_region_variant; upstream_gene_variant	1(0/1/0)	1.0[YRI]
rs4774800	intron_variant	1(0/1/0)	1.0[CHB]; 1.0[JPT]
rs11854213	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.856[CHB]; 0.805[JPT]; 1.0[YRI]
rs2414424	intron_variant	1(1/0/0)	0.85[CHB]

rs_ID	Functional Annotation	r²[population]
rs1014551	intron_variant	1.0[YRI]
rs16976450	intron_variant	1.0[CHB]; 0.899[JPT]
rs16976472	downstream_gene_variant; intron_variant	0.907[CHB]
rs10518817	intron_variant	0.907[CHB]; 0.904[JPT]
rs12591246	intron_variant	0.813[CHB]
rs2414427	intron_variant	0.85[CHB]
rs572531	downstream_gene_variant; intron_variant	0.85[JPT]
rs7171318	downstream_gene_variant; intron_variant	0.907[CHB]; 0.906[JPT]
rs12903822	intron_variant	0.914[CEU]; 1.0[CHB]; 0.95[JPT]
rs7178379	3_prime_UTR_variant; intron_variant	0.907[CHB]; 0.952[JPT]
rs2414426	intron_variant	0.85[CHB]
rs10851589	intron_variant	0.907[CHB]; 0.953[JPT]
rs4774802	intron_variant	0.803[CHB]
rs9920246	downstream_gene_variant; intron_variant	1.0[CHB]; 0.906[JPT]
rs2118781	downstream_gene_variant; intron_variant; upstream_gene_variant	0.851[CHB]; 0.857[JPT]
rs2008336	intron_variant	0.814[CHB]
rs12373006	downstream_gene_variant; intron_variant; upstream_gene_variant	0.902[CHB]; 0.899[JPT]
rs8025445	downstream_gene_variant; intron_variant	0.856[CHB]; 0.857[JPT]
rs9920076	downstream_gene_variant; intron_variant	1.0[CHB]; 0.904[JPT]
rs7181471		0.807[CHB]