SNP Report
Basic Info
Name |
rs13162302
dbSNP
Ensembl
|
Location |
Chr5:159367275(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000306675) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)
rs_ID |
Functional Annotation |
r2[population] |
rs10515806
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs11741191
|
intron_variant |
1.0[CEU]; 1.0[JPT]; 1.0[YRI]
|
rs4921241
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs4921242
|
intron_variant |
0.875[CEU]; 1.0[JPT]
|
rs11738707
|
downstream_gene_variant; intron_variant |
0.861[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs11743363
|
intron_variant |
0.868[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs10515805
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs11750092
|
intron_variant |
1.0[CEU]; 1.0[JPT]; 0.892[YRI]
|
rs11741223
|
intron_variant |
0.875[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs34467921
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.868[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs4921100
|
intron_variant |
0.875[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs13179079
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
|
rs11738480
|
intron_variant |
0.868[CEU]; 1.0[JPT]
|
rs11742073
|
downstream_gene_variant; intron_variant |
0.868[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs11743425
|
intron_variant |
1.0[CEU]; 1.0[JPT]; 0.9[YRI]
|