ADHDgene Database

SNP Report

Basic Info

Name	rs14050 dbSNP Ensembl
Location	Chr17:37828072(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000300658; ENST00000378011; ENST00000579146) downstream_gene_variant(ENST00000581428; ENST00000269582; ENST00000394246; ENST00000582276; ENST00000577337; ENST00000584620; ENST00000580898; ENST00000429199) nc_transcript_variant(ENST00000309862) non_coding_exon_variant(ENST00000309862)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PNMT	phenylethanolamine N-methyltransferase	17q	3(2/1/0)

Approved Symbol	Approved Name	Location
PGAP3	post-GPI attachment to proteins 3	17q21.2

SNPs in LD with rs14050 (count: 5) View in gBrowse (chr17:37781849..37828496 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs879606	downstream_gene_variant; upstream_gene_variant	1(0/1/0)	0.822[JPT]
rs1053651	downstream_gene_variant; synonymous_variant; upstream_gene_variant	1(0/1/0)	0.908[CHB]; 0.875[CHD]; 0.905[JPT]; 0.895[TSI]
rs907094	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.822[JPT]
rs3764352	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.822[JPT]
rs2952151	3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.838[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.957[MEX]; 0.845[MKK]; 1.0[TSI]