ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1427324 dbSNP Ensembl
Location Chr14:59364693(Fwd)
Variant Alleles C/T
Ancestral Allele C
Functional Annotation downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000553762)
intron_variant(ENST00000555378; ENST00000556815; ENST00000556026)
nc_transcript_variant(ENST00000555378; ENST00000556815; ENST00000556026)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2008 T:C Uncorrected TDT P-value=1.75E-05 (OR=0.7236); Corrected TDT ...... Uncorrected TDT P-value=1.75E-05 (OR=0.7236); Corrected TDT P-value=3.50E-05 (OR=0.7236) More... One of top 25 results in both uncorrected and corrected TDT ...... One of top 25 results in both uncorrected and corrected TDT test More... Non-significant
Lantieri F, 2010 T:C Binomial P-value=0.46, OR=0.98 for whole sample; Binomial P-...... Binomial P-value=0.46, OR=0.98 for whole sample; Binomial P-value=0.42, OR=0.96 for C-subtype More... no significant association no significant association Non-significant

SNP related genes (count: 0)

SNPs in LD with rs1427324 (count: 30) View in gBrowse (chr14:59290964..59521575 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 29)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014