SNP Report
Basic Info
Name |
rs16965628
dbSNP
Ensembl
|
Location |
Chr17:28555425(Fwd) |
Variant Alleles |
G/C |
Ancestral Allele |
C |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000401766; ENST00000394821; ENST00000261707) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 23)
rs_ID |
Functional Annotation |
r2[population] |
rs8081598
|
downstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs7209807
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs11651322
|
intron_variant |
1.0[CHB]
|
rs2020933
|
intron_variant; upstream_gene_variant |
0.825[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs6505166
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs8082169
|
upstream_gene_variant |
1.0[CHB]
|
rs8071585
|
downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs8069399
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs6505172
|
downstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs12150183
|
|
0.846[CHB]
|
rs16965639
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs16965663
|
NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs16965656
|
NMD_transcript_variant; downstream_gene_variant; intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs16965690
|
|
1.0[CHB]
|
rs6505167
|
NMD_transcript_variant; downstream_gene_variant; intron_variant |
1.0[CHB]
|
rs6505170
|
upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs8071419
|
upstream_gene_variant |
1.0[CHB]
|
rs11871800
|
NMD_transcript_variant; downstream_gene_variant; intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs16965693
|
downstream_gene_variant |
1.0[CHB]
|
rs8081386
|
upstream_gene_variant |
1.0[CHB]
|
rs1552472
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs7223487
|
NMD_transcript_variant; intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs16965661
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|