ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs17031719 dbSNP Ensembl
Location Chr12:102022264(Fwd)
Variant Alleles A/G
Ancestral Allele A
Functional Annotation downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000547627)
intron_variant(ENST00000550514; ENST00000536007; ENST00000361466; ENST00000547509; ENST00000553190; ENST00000541119; ENST00000361685; ENST00000392934; ENST00000550270; ENST00000545503; ENST00000551300; ENST00000550312; ENST00000452455; ENST00000547405; ENST00000441232; ENST00000549145; ENST00000552198; ENST00000550501; ENST00000360610)
nc_transcript_variant(ENST00000550312; ENST00000550501; ENST00000552198)
upstream_gene_variant(ENST00000548834)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Hinney, A., 2011 G GWAS P-value=1.62E-05, OR=1.53, Replication FBAT P-value=0.2...... GWAS P-value=1.62E-05, OR=1.53, Replication FBAT P-value=0.2489, Combination P-value=1.03E-04 More... This GWAS in a small group of clinically ascertained young G...... This GWAS in a small group of clinically ascertained young German patients with ADHD and population-based controls did not reveal genome-wide significant findings. Replication attempts in further German and international samples did also not lead to a P-value(s) below 5E-08. More... Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs17031719 (count: 16) View in gBrowse (chr12:102022264..102071290 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014