SNP Report
Basic Info
Name |
rs17095690
dbSNP
Ensembl
|
Location |
Chr1:75106741(Fwd) |
Variant Alleles |
G/A |
Ancestral Allele |
G |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000326665) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)
rs_ID |
Functional Annotation |
r2[population] |
rs696694
|
intron_variant; nc_transcript_variant |
0.837[JPT]
|
rs1340986
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.847[CEU]; 0.868[CHB]; 0.941[JPT]
|
rs696687
|
intron_variant; upstream_gene_variant |
0.837[JPT]
|
rs696686
|
intron_variant; upstream_gene_variant |
0.837[JPT]
|
rs696702
|
intron_variant; nc_transcript_variant |
0.837[JPT]
|
rs696700
|
intron_variant; nc_transcript_variant |
0.836[JPT]
|
rs2344506
|
feature_truncation; intron_variant; nc_transcript_variant |
0.837[JPT]
|
rs1417586
|
downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.863[CHB]; 0.941[JPT]
|
rs624818
|
intron_variant |
1.0[CHB]; 0.941[JPT]
|
rs699849
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
0.856[JPT]
|
rs696688
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
0.837[JPT]
|
rs696699
|
intron_variant; nc_transcript_variant |
0.837[JPT]
|
rs3931879
|
downstream_gene_variant |
0.837[JPT]
|
rs3911348
|
|
0.837[JPT]
|
rs730645
|
intron_variant |
0.862[CEU]; 1.0[CHB]; 0.935[CHD]; 0.97[GIH]; 1.0[JPT]; 1.0[MEX]; 0.921[TSI]
|