ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs17611827 dbSNP Ensembl
Location	Chr16:3367061(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000575812; ENST00000572999) intron_variant(ENST00000571101; ENST00000573594; ENST00000575253; ENST00000293995; ENST00000498240; ENST00000574298) nc_transcript_variant(ENST00000498240; ENST00000575253; ENST00000571101)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	A:G		P-value=1.45E-05 P-value=1.45E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
ZNF75A	zinc finger protein 75a	16p13.11	1(0/0/1)

Genes from other sources (count: 0)

SNPs in LD with rs17611827 (count: 25) View in gBrowse (chr16:3317036..3376243 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 25)

rs_ID	Functional Annotation	r²[population]
rs188761	downstream_gene_variant; intron_variant; upstream_gene_variant	0.911[CHD]; 0.901[GIH]; 1.0[JPT]
rs757108	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.904[CEU]; 1.0[CHD]; 0.894[GIH]; 1.0[JPT]; 0.861[MEX]
rs17136314	intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.807[YRI]
rs7195571	5_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.904[CEU]; 1.0[JPT]
rs12325636	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.904[CEU]; 1.0[JPT]; 0.931[YRI]
rs41378246	upstream_gene_variant	0.931[YRI]
rs220379	3_prime_UTR_variant; 5_prime_UTR_variant; downstream_gene_variant; missense_variant; upstream_gene_variant	0.911[CHD]; 0.901[GIH]; 1.0[JPT]
rs220380	3_prime_UTR_variant; downstream_gene_variant; intron_variant	0.81[CEU]; 0.911[CHD]; 0.901[GIH]; 1.0[JPT]
rs6501169	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.853[CEU]; 1.0[CHD]; 0.858[GIH]; 1.0[JPT]
rs7185015	3_prime_UTR_variant; 5_prime_UTR_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	0.81[CEU]; 1.0[CHD]; 0.901[GIH]; 1.0[JPT]; 0.859[MEX]
rs220376	intron_variant; upstream_gene_variant	0.81[CEU]; 1.0[CHD]; 0.901[GIH]
rs12325187	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[JPT]; 1.0[YRI]
rs224241	intron_variant; nc_transcript_variant	0.853[CEU]
rs17136319	downstream_gene_variant; intron_variant; nc_transcript_variant	0.931[YRI]
rs7500738	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.904[CEU]; 1.0[CHD]; 0.894[GIH]; 1.0[JPT]; 0.857[MEX]
rs188760	3_prime_UTR_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	0.911[CHD]; 0.901[GIH]; 1.0[JPT]; 0.819[MEX]
rs190081	intron_variant	0.844[CEU]; 1.0[CHD]; 0.901[GIH]; 0.819[MEX]
rs17136317	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 0.904[CEU]; 1.0[CHD]; 0.948[GIH]; 1.0[JPT]; 1.0[LWK]; 0.909[MEX]; 1.0[MKK]; 1.0[YRI]
rs458522	intron_variant; upstream_gene_variant	0.804[CEU]; 1.0[JPT]
rs220382	downstream_gene_variant; intron_variant	0.81[CEU]; 1.0[CHD]; 0.897[GIH]; 1.0[JPT]; 0.819[MEX]
rs186371	5_prime_UTR_variant; intron_variant; upstream_gene_variant	0.911[CHD]; 0.948[GIH]; 1.0[JPT]
rs8052682	downstream_gene_variant; intron_variant	0.81[CEU]; 1.0[JPT]
rs17684522	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.904[CEU]; 1.0[JPT]
rs17684582	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.904[CEU]; 1.0[CHD]; 0.894[GIH]; 1.0[JPT]
rs17611866	downstream_gene_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant	0.904[CEU]; 1.0[CHD]; 0.948[GIH]; 1.0[JPT]; 0.901[MEX]