ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs1800532 dbSNP Ensembl
Location Chr11:18047816(Fwd)
Variant Alleles G/T
Ancestral Allele G
Functional Annotation NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000417164)
downstream_gene_variant(ENST00000528338)
intron_variant(ENST00000250018; ENST00000341556; ENST00000417164)
upstream_gene_variant(ENST00000525523; ENST00000525406)
No. of Studies 3 (significant: 1; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 3)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Gizer IR, 2009 Meta-analysis model: Random: OR=0.97, 95% CI=0.83-1.12, two-...... Meta-analysis model: Random: OR=0.97, 95% CI=0.83-1.12, two-tailed P-value=0.662; Q-statistic: P-value=0.164, I2=41 More... no evidence to suggest an association between this polymorph...... no evidence to suggest an association between this polymorphisms and ADHD More... Non-significant
Johansson S, 2010 logistic regression P-value=0.21, OR=1.12 logistic regression P-value=0.21, OR=1.12 no significant association no significant association Non-significant
Ribases M, 2009(b) Case-control test: lowest P-value=0.015 for genotype analysi...... Case-control test: lowest P-value=0.015 for genotype analysis, P-value=0.03 for allele analysis in childhood combined ADHD. More... no significance after correcting for multiple comparisons no significance after correcting for multiple comparisons Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs1800532 (count: 39) View in gBrowse (chr11:17942831..18073142 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 1)

LD-proxies (count: 38)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014