SNP Report
Basic Info
Name |
rs1874228
dbSNP
Ensembl
|
Location |
Chr17:37775274(Fwd) |
Variant Alleles |
A/G |
Ancestral Allele |
A |
Functional Annotation |
upstream_gene_variant.
|
Consequence to Transcript |
upstream_gene_variant(ENST00000398554) |
No. of Studies |
0 (significant: 0; non-significant: 0; trend: 0) |
Source |
LD-proxy
|
SNP related studies (count: 0)
SNP related genes (count: 0)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 5)
|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs1053651
|
downstream_gene_variant; synonymous_variant; upstream_gene_variant |
1(0/1/0)
|
0.945[CEU]; 0.828[CHB]; 0.835[CHD]; 0.916[GIH]; 0.822[JPT]
|
rs879606
|
downstream_gene_variant; upstream_gene_variant |
1(0/1/0)
|
0.954[CHB]; 1.0[CHD]; 1.0[JPT]
|
rs907094
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/1/0)
|
0.823[ASW]; 0.954[CHB]; 0.976[CHD]; 0.866[GIH]; 1.0[JPT]; 0.923[LWK]; 0.871[MKK]
|
rs3764352
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/1/0)
|
0.823[ASW]; 0.954[CHB]; 0.976[CHD]; 0.866[GIH]; 1.0[JPT]; 0.923[LWK]; 0.871[MKK]
|
rs2952151
|
3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant |
1(0/1/0)
|
0.822[JPT]
|
LD-proxies (count: 0)