SNP Report
Basic Info
SNP related studies (count: 0)
SNP related genes (count: 2)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 5)
|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs1053651
|
downstream_gene_variant; synonymous_variant; upstream_gene_variant |
1(0/1/0)
|
0.811[CEU]; 1.0[CHB]; 1.0[CHD]; 0.945[GIH]; 1.0[JPT]; 0.876[MEX]; 0.924[TSI]
|
rs907094
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/1/0)
|
0.879[ASW]; 0.868[CHB]; 0.861[CHD]; 0.895[GIH]; 0.822[JPT]; 0.923[LWK]; 0.954[MKK]
|
rs2952151
|
3_prime_UTR_variant; downstream_gene_variant; nc_transcript_variant; non_coding_exon_variant |
1(0/1/0)
|
0.908[CHB]; 0.875[CHD]; 0.905[JPT]; 0.826[TSI]
|
rs879606
|
downstream_gene_variant; upstream_gene_variant |
1(0/1/0)
|
0.868[CHB]; 0.832[CHD]; 0.822[JPT]
|
rs3764352
|
NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant |
1(0/1/0)
|
0.879[ASW]; 0.868[CHB]; 0.861[CHD]; 0.895[GIH]; 0.822[JPT]; 0.923[LWK]; 0.954[MKK]
|
LD-proxies (count: 0)