ADHDgene Database

SNP Report

Basic Info

Name	rs1903977 dbSNP Ensembl
Location	Chr10:53776286(Fwd)
Variant Alleles	T/A
Ancestral Allele	T
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000373985; ENST00000373980; ENST00000373976; ENST00000401604)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	A:T		GLM P-value=1.50E-05, meta-analysis P-value=0.1749 GLM P-value=1.50E-05, meta-analysis P-value=0.1749	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PRKG1	protein kinase, cGMP-dependent, type I	10q11.2	1(0/0/1)

SNPs in LD with rs1903977 (count: 34) View in gBrowse (chr10:53733476..53790461 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs7893146	intron_variant	1(0/1/0)	1.0[CHB]; 0.941[CHD]; 1.0[JPT]
rs1903979	intron_variant	1(0/1/0)	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.97[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs10823978	intron_variant	1(0/1/0)	1.0[CHB]
rs10823973	intron_variant	1(0/0/1)	0.944[YRI]
rs10823954	intron_variant	1(0/1/0)	1.0[CHB]; 0.941[CHD]; 1.0[JPT]; 0.827[MKK]