SNP Report
Basic Info
Name |
rs1918172
dbSNP
Ensembl
|
Location |
Chr2:156888500(Fwd) |
Variant Alleles |
C/G |
Ancestral Allele |
G |
Functional Annotation |
downstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000450741) |
No. of Studies |
1 (significant: 0; non-significant: 0; trend: 1) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 0)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 11)
rs_ID |
Functional Annotation |
r2[population] |
rs1110075
|
downstream_gene_variant; upstream_gene_variant |
0.863[CHB]; 0.818[CHD]; 0.927[JPT]
|
rs1534261
|
upstream_gene_variant |
0.863[CHB]; 0.822[CHD]; 0.927[JPT]
|
rs11680065
|
|
0.806[CHB]; 0.817[GIH]; 0.805[JPT]
|
rs2177952
|
|
1.0[CHB]; 0.877[GIH]; 1.0[JPT]
|
rs1918173
|
upstream_gene_variant |
0.863[CHB]; 0.822[CHD]; 0.927[JPT]
|
rs7570959
|
downstream_gene_variant; upstream_gene_variant |
0.863[CHB]; 0.822[CHD]; 0.927[JPT]
|
rs7371289
|
intron_variant; nc_transcript_variant |
0.923[JPT]
|
rs6748811
|
intron_variant; nc_transcript_variant; non_coding_exon_variant |
0.806[CHB]; 0.805[JPT]
|
rs2882618
|
upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.879[GIH]; 1.0[JPT]; 0.878[MEX]; 0.85[MKK]; 0.946[TSI]
|
rs1534260
|
upstream_gene_variant |
0.877[ASW]; 0.866[CEU]; 0.928[CHB]; 1.0[CHD]; 0.863[GIH]; 1.0[JPT]; 0.907[LWK]; 1.0[MEX]; 0.865[MKK]; 1.0[YRI]
|
rs4664790
|
downstream_gene_variant |
0.806[CHB]; 0.805[JPT]
|