ADHDgene Database

SNP Report

Basic Info

Name	rs2079509 dbSNP Ensembl
Location	Chr7:34652874(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000535640; ENST00000544556) intron_variant(ENST00000419766; ENST00000358772; ENST00000439852; ENST00000537560; ENST00000539747) nc_transcript_variant(ENST00000419766; ENST00000358772; ENST00000439852; ENST00000537560; ENST00000539747)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location
NPSR1-AS1	NPSR1 antisense RNA 1	7p14.3

SNPs in LD with rs2079509 (count: 5) View in gBrowse (chr7:34599721..34696545 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2893482	intron_variant; nc_transcript_variant	1(0/1/0)	0.818[CHB]; 0.835[CHD]; 0.82[GIH]
rs6462569	intron_variant; nc_transcript_variant	1(0/1/0)	0.908[CHB]; 0.881[CHD]; 0.82[GIH]; 0.86[MEX]
rs12690808	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.818[CHB]; 0.835[CHD]; 0.82[GIH]; 0.81[MEX]
rs1023556	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.868[CHB]; 0.903[JPT]
rs10258145	intron_variant; nc_transcript_variant	1(0/1/0)	0.82[GIH]; 0.81[MEX]