SNP Report
Basic Info
Name |
rs258099
dbSNP
Ensembl
|
Location |
Chr16:55747177(Fwd) |
Variant Alleles |
C/T |
Ancestral Allele |
C |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 15)
rs_ID |
Functional Annotation |
r2[population] |
rs12925175
|
intron_variant; nc_transcript_variant |
0.857[CHB]; 0.95[JPT]; 0.849[YRI]
|
rs4784563
|
intron_variant; nc_transcript_variant |
0.817[CEU]
|
rs12926148
|
nc_transcript_variant; non_coding_exon_variant |
0.857[CHB]; 0.95[JPT]
|
rs6499782
|
intron_variant; nc_transcript_variant |
0.857[CHB]; 0.95[JPT]; 0.805[YRI]
|
rs4580160
|
intron_variant; nc_transcript_variant |
0.857[CHB]; 0.899[JPT]
|
rs258094
|
upstream_gene_variant |
0.855[CHB]; 0.95[JPT]; 0.901[YRI]
|
rs8048319
|
upstream_gene_variant |
0.906[CHB]; 1.0[JPT]; 0.9[YRI]
|
rs6499775
|
upstream_gene_variant |
0.95[JPT]
|
rs9936369
|
intron_variant; nc_transcript_variant |
0.821[CEU]
|
rs12926060
|
intron_variant; nc_transcript_variant |
0.864[CHB]; 0.952[JPT]
|
rs11862079
|
intron_variant; nc_transcript_variant |
0.817[CEU]
|
rs7184889
|
intron_variant; nc_transcript_variant |
0.947[JPT]
|
rs12443715
|
intron_variant; nc_transcript_variant |
0.857[CHB]; 0.95[JPT]; 0.805[YRI]
|
rs4784560
|
intron_variant; nc_transcript_variant |
0.865[CHB]; 0.902[JPT]; 0.86[YRI]
|
rs174014
|
upstream_gene_variant |
0.824[CHB]; 0.952[JPT]
|