ADHDgene Database

SNP Report

Basic Info

Name	rs258099 dbSNP Ensembl
Location	Chr16:55747177(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Kim JW, 2008			X²=0.265, P-value=0.607, OR=1.05 X²=0.265, P-value=0.607, OR=1.05	not associated with ADHD not associated with ADHD	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
NET1	neuroepithelial cell transforming 1	10p15	0

SNPs in LD with rs258099 (count: 15) View in gBrowse (chr16:55747177..55783137 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs12925175	intron_variant; nc_transcript_variant	0.857[CHB]; 0.95[JPT]; 0.849[YRI]
rs4784563	intron_variant; nc_transcript_variant	0.817[CEU]
rs12926148	nc_transcript_variant; non_coding_exon_variant	0.857[CHB]; 0.95[JPT]
rs6499782	intron_variant; nc_transcript_variant	0.857[CHB]; 0.95[JPT]; 0.805[YRI]
rs4580160	intron_variant; nc_transcript_variant	0.857[CHB]; 0.899[JPT]
rs258094	upstream_gene_variant	0.855[CHB]; 0.95[JPT]; 0.901[YRI]
rs8048319	upstream_gene_variant	0.906[CHB]; 1.0[JPT]; 0.9[YRI]
rs6499775	upstream_gene_variant	0.95[JPT]
rs9936369	intron_variant; nc_transcript_variant	0.821[CEU]
rs12926060	intron_variant; nc_transcript_variant	0.864[CHB]; 0.952[JPT]
rs11862079	intron_variant; nc_transcript_variant	0.817[CEU]
rs7184889	intron_variant; nc_transcript_variant	0.947[JPT]
rs12443715	intron_variant; nc_transcript_variant	0.857[CHB]; 0.95[JPT]; 0.805[YRI]
rs4784560	intron_variant; nc_transcript_variant	0.865[CHB]; 0.902[JPT]; 0.86[YRI]
rs174014	upstream_gene_variant	0.824[CHB]; 0.952[JPT]