ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs2602381 dbSNP Ensembl
Location	Chr2:234584324(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000354728; ENST00000373445; ENST00000344644; ENST00000373450)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Mick E, 2010		A	TDT P-value=3.85E-06 (OR=1.42) TDT P-value=3.85E-06 (OR=1.42)	One of the top 20 associations from genome-wide association ...... One of the top 20 associations from genome-wide association results; annotated by GWAS Catalog More...	Trend

SNP related genes (count: 4)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
UGT1A9	UDP glucuronosyltransferase 1 family, polypeptide A9	2q37	1(0/0/1)

Genes from other sources (count: 3)

Approved Symbol	Approved Name	Location
UGT1A7	UDP glucuronosyltransferase 1 family, polypeptide A7	2q37
UGT1A10	UDP glucuronosyltransferase 1 family, polypeptide A10	2q37
UGT1A8	UDP glucuronosyltransferase 1 family, polypeptide A8	2q37

SNPs in LD with rs2602381 (count: 75) View in gBrowse (chr2:234581587..234676118 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 75)

rs_ID	Functional Annotation	r²[population]
rs17868334	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12463641	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs12466997	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs17864705	NMD_transcript_variant; intron_variant	0.812[CHB]; 0.93[JPT]
rs28898596	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs3892170	NMD_transcript_variant; intron_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant	0.812[CHB]; 0.93[JPT]
rs17862870	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12477216	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.927[JPT]
rs17874943	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12466779	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs4485562	downstream_gene_variant; intron_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs7592624	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.924[CEU]; 0.828[GIH]; 0.913[TSI]
rs2885295	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.811[CHB]; 0.928[JPT]
rs12479208	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs17868342	NMD_transcript_variant; intron_variant	0.812[CHB]; 0.93[JPT]
rs2013030	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12476197	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs12988520	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.888[CEU]; 0.833[CHB]; 0.845[TSI]
rs4663327	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.801[JPT]
rs2003569	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs17863792	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.904[CHB]; 0.93[JPT]
rs3755321	NMD_transcript_variant; intron_variant; missense_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs3796088	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs28898621	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs10929293	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.812[CHB]; 0.93[JPT]
rs3806594	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs3806595	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs3806593	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs4663964	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.812[CHB]; 0.93[JPT]
rs4663945	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12468356	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs12052787	NMD_transcript_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs4663871	intron_variant	0.811[CHB]; 1.0[JPT]
rs12474980	3_prime_UTR_variant; downstream_gene_variant; intron_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs3732218	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs3806591	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.927[JPT]
rs12053462	intron_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs28898615	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs2013021	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs17864686	intron_variant; synonymous_variant	0.904[CHB]; 1.0[JPT]
rs17868325	intron_variant	0.904[CHB]; 1.0[JPT]
rs904855	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs4663325	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.801[JPT]
rs12472689	intron_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs3732220	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12468543	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs904856	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.863[JPT]
rs28898605	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs3771342	NMD_transcript_variant; intron_variant	0.812[CHB]; 0.93[JPT]
rs2013018	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs1018124	NMD_transcript_variant; downstream_gene_variant; intron_variant	0.812[CHB]; 0.93[JPT]
rs3732221	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs4663877	intron_variant; upstream_gene_variant	0.896[CHB]; 1.0[JPT]
rs17863798	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs28899187	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs28899186	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs6751673	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.873[JPT]
rs4663326	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs6753317	intron_variant	0.904[CHB]; 1.0[JPT]
rs3893334	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs17862878	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.812[CHB]; 0.93[JPT]
rs7420193	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.812[CHB]; 0.93[JPT]
rs12466747	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.904[CHB]; 1.0[JPT]
rs12479045	NMD_transcript_variant; intron_variant	0.812[CHB]; 0.93[JPT]
rs28899189	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs4663968	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs28946877	intron_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs17863791	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12475068	NMD_transcript_variant; intron_variant; missense_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs12471030	NMD_transcript_variant; feature_truncation; intron_variant; nc_transcript_variant	0.904[CHB]; 1.0[JPT]
rs12474215	intron_variant; upstream_gene_variant	0.904[CHB]; 1.0[JPT]
rs4556969	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.812[CHB]; 0.93[JPT]
rs17862857	intron_variant	0.812[CHB]; 1.0[JPT]
rs4233633	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.801[JPT]
rs1604144	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.873[JPT]