ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs2747100 dbSNP Ensembl
Location Chr14:58464986(Fwd)
Variant Alleles G/C
Ancestral Allele C
Functional Annotation downstream_gene_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000267485; ENST00000556788)
upstream_gene_variant(ENST00000563647)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Lantieri F, 2010 G:C Binomial P-value=0.42, OR=0.98 for whole sample; Binomial P-...... Binomial P-value=0.42, OR=0.98 for whole sample; Binomial P-value=0.31, OR=0.94 for C-subtype More... no significant association no significant association Non-significant
Neale BM, 2008 G:C Uncorrected TDT P-value=5.66E-05 (OR=0.7637) Uncorrected TDT P-value=5.66E-05 (OR=0.7637) One of top 25 results in uncorrected TDT test One of top 25 results in uncorrected TDT test Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 0)

Genes from other sources Help (count: 1)


SNPs in LD with rs2747100 (count: 33) View in gBrowse (chr14:58462948..58507598 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 33)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014