ADHDgene Database

SNP Report

Basic Info

Name	rs2852853 dbSNP Ensembl
Location	Chr11:71150217(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000529990; ENST00000527452; ENST00000531364; ENST00000526780; ENST00000525346) intron_variant(ENST00000524694; ENST00000527316; ENST00000534701; ENST00000355527; ENST00000407721) nc_transcript_variant(ENST00000534701) upstream_gene_variant(ENST00000525137; ENST00000534795; ENST00000533800)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DHCR7	7-dehydrocholesterol reductase	11q13.4	1(0/0/1)

SNPs in LD with rs2852853 (count: 5) View in gBrowse (chr11:71150217..71171003 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs12422045	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/0/1)	1.0[CEU]; 0.867[CHB]; 0.892[JPT]
rs7928249	intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/0/1)	0.942[CEU]; 0.953[CHB]; 0.892[JPT]
rs12800438	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1(0/0/1)	0.942[CEU]; 0.909[CHB]; 0.892[JPT]
rs3750997	5_prime_UTR_variant; intron_variant; upstream_gene_variant	1(0/0/1)	1.0[CEU]
rs11603330	downstream_gene_variant; intron_variant; upstream_gene_variant	1(0/0/1)	1.0[CEU]; 0.867[CHB]; 0.892[JPT]