SNP Report
Basic Info
Name |
rs2860025
dbSNP
Ensembl
|
Location |
Chr5:52114050(Fwd) |
Variant Alleles |
G/A |
Ancestral Allele |
G |
Functional Annotation |
intron_variant; nc_transcript_variant.
|
Consequence to Transcript |
intron_variant(ENST00000504086; ENST00000282588) nc_transcript_variant(ENST00000504086) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 12)
rs_ID |
Functional Annotation |
r2[population] |
rs17211100
|
intron_variant; nc_transcript_variant |
0.898[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs17211038
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs17210759
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs6450090
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.964[YRI]
|
rs6887205
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.928[YRI]
|
rs6887358
|
intron_variant; nc_transcript_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.967[YRI]
|
rs17209627
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs17209947
|
3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs4865747
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs10471813
|
intron_variant; nc_transcript_variant; upstream_gene_variant |
1.0[CHB]; 1.0[JPT]
|
rs1820167
|
intron_variant; nc_transcript_variant |
0.834[YRI]
|
rs1423546
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 0.921[JPT]
|