ADHDgene Database

SNP Report

Basic Info

Name	rs2937639 dbSNP Ensembl
Location	Chr5:1443728(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000270349) upstream_gene_variant(ENST00000513308; ENST00000453492)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Shang CY, 2011	A/G		G allele FBAT P-value=0.249, Z=1.154 for total sample; G all...... G allele FBAT P-value=0.249, Z=1.154 for total sample; G allele FBAT P-value=0.118, Z=1.565 for combined subtype; G allele FBAT P-value=0.662, Z=0.438 for inattentive subtype More...	no significant associations in the total sample no significant associations in the total sample	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC6A3	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	5p15.3	68(42/25/1)

SNPs in LD with rs2937639 (count: 4) View in gBrowse (chr5:1442521..1450444 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2550948	upstream_gene_variant	2(2/0/0)	0.923[CEU]; 0.851[CHB]; 0.866[CHD]; 0.833[JPT]; 1.0[MEX]; 0.84[TSI]
rs2550956	upstream_gene_variant	2(0/2/0)	0.851[CHB]
rs2617605	intron_variant	1(0/1/0)	0.821[CHD]