ADHDgene Database

SNP Report

Basic Info

Name	rs36051446 dbSNP Ensembl
Location	Chr3:61603665(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000495879; ENST00000475527; ENST00000295874; ENST00000474889) nc_transcript_variant(ENST00000495879; ENST00000475527)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (a)	T:C		P-value=1.72E-05 P-value=1.72E-05	one of top 50 hits from the Genome-Wide Attention-Deficit/Hy...... one of top 50 hits from the Genome-Wide Attention-Deficit/Hyperactivity Disorder (ADHD) meta-analysis More...	Trend

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
PTPRG	protein tyrosine phosphatase, receptor type, G	3p21-p14	1(0/0/1)

SNPs in LD with rs36051446 (count: 11) View in gBrowse (chr3:61580040..61630014 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs4688644	intron_variant; nc_transcript_variant	0.865[CHB]; 0.946[JPT]
rs4390919	intron_variant; nc_transcript_variant	0.815[CHB]
rs12489977	intron_variant; nc_transcript_variant	0.946[JPT]
rs4688261	intron_variant; nc_transcript_variant	0.868[CHB]; 0.946[JPT]
rs1316500	intron_variant; nc_transcript_variant	0.857[CHB]; 0.942[JPT]
rs12635919	intron_variant; nc_transcript_variant	0.866[GIH]
rs9881520	intron_variant; nc_transcript_variant	0.868[CHB]; 0.946[JPT]; 0.831[MEX]
rs4688646	intron_variant; nc_transcript_variant	0.91[CHB]; 0.945[JPT]
rs1996520	intron_variant; nc_transcript_variant	0.838[CHD]
rs1320234	intron_variant; nc_transcript_variant	0.954[CHB]; 0.904[CHD]; 0.844[GIH]; 0.946[JPT]; 0.834[MEX]
rs9882445	intron_variant; nc_transcript_variant	0.92[ASW]; 0.861[CHB]; 0.883[CHD]; 0.841[GIH]; 0.946[JPT]; 0.956[MEX]