ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs42259 dbSNP Ensembl
Location Chr5:14386655(Fwd)
Variant Alleles T/C
Ancestral Allele C
Functional Annotation NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000512070)
intron_variant(ENST00000344204; ENST00000537187; ENST00000509967; ENST00000512070; ENST00000515144; ENST00000513206)
nc_transcript_variant(ENST00000515144)
upstream_gene_variant(ENST00000510757; ENST00000502490)
No. of Studies 1 (significant: 0; non-significant: 0; trend: 1)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Stergiakouli E., 2012 T/C T P=0.00000676, OR=1.41, 95% CI=1.22-1.64 P=0.00000676, OR=1.41, 95% CI=1.22-1.64 One of the top 22 independent SNP in this ADHD GWAS. One of the top 22 independent SNP in this ADHD GWAS. Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs42259 (count: 29) View in gBrowse (chr5:14300033..14420027 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 29)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014