ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs4923705 dbSNP Ensembl
Location	Chr15:36293605(Fwd)
Variant Alleles	G/A
Ancestral Allele	G
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000561394) nc_transcript_variant(ENST00000561394)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Mick E, 2010		C	TDT P-value=2.40E-06 (OR=1.51) TDT P-value=2.40E-06 (OR=1.51)	One of the top 20 associations from genome-wide association ...... One of the top 20 associations from genome-wide association results; annotated by GWAS Catalog More...	Trend

SNP related genes (count: 0)

SNPs in LD with rs4923705 (count: 60) View in gBrowse (chr15:36280268..36326018 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 60)

rs_ID	Functional Annotation	r²[population]
rs2175271	intron_variant; nc_transcript_variant	0.831[ASW]; 1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs9806757	intron_variant; nc_transcript_variant	0.951[CHB]; 0.946[JPT]
rs9302313	intron_variant; nc_transcript_variant	0.952[CHB]; 0.924[CHD]; 0.846[GIH]; 1.0[JPT]
rs7162975	intron_variant; nc_transcript_variant	0.889[ASW]; 1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs11634112	intron_variant; nc_transcript_variant	0.82[CEU]
rs10520043	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.842[GIH]; 1.0[JPT]
rs11073137	intron_variant; nc_transcript_variant	0.82[CEU]
rs16962388	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2339987	intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 0.94[TSI]; 1.0[YRI]
rs1510368	intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.912[LWK]; 0.912[MEX]; 0.972[MKK]; 1.0[TSI]; 0.963[YRI]
rs12442859	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]; 0.823[YRI]
rs7169565	intron_variant; nc_transcript_variant	0.82[CEU]
rs2055853	intron_variant; nc_transcript_variant	0.82[CEU]
rs12441039	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8039618	intron_variant; nc_transcript_variant	0.82[CEU]
rs16962348	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs16962350	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.848[GIH]; 0.948[JPT]
rs16962240	intron_variant; nc_transcript_variant	0.951[CHB]; 1.0[CHD]; 0.885[GIH]; 1.0[JPT]
rs12442636	intron_variant; nc_transcript_variant	0.95[CHB]; 0.944[JPT]
rs9806671	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8042559	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs1510390	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.805[GIH]; 1.0[JPT]
rs1397262	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs11073138	intron_variant; nc_transcript_variant	0.82[CEU]
rs2879657	intron_variant; nc_transcript_variant	1.0[CEU]; 0.951[CHB]; 1.0[JPT]; 0.93[YRI]
rs938002	intron_variant; nc_transcript_variant	0.951[CHB]; 0.948[JPT]
rs7168471	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs16962385	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16962252	intron_variant; nc_transcript_variant	0.951[CHB]; 1.0[CHD]; 0.848[GIH]; 1.0[JPT]
rs10520042	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs12438913	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.878[GIH]; 1.0[JPT]
rs16962306	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16962261	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.885[GIH]; 1.0[JPT]
rs7173148	intron_variant; nc_transcript_variant	1.0[CEU]; 0.951[CHB]; 0.948[JPT]; 0.93[YRI]
rs16962289	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs1397264	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16962324	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16962313	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs17618188	intron_variant; nc_transcript_variant	0.82[CEU]
rs12440363	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs11638994	intron_variant; nc_transcript_variant	0.812[CEU]
rs12440400	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16962310	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs12440077	intron_variant; nc_transcript_variant	0.951[CHB]; 1.0[JPT]
rs16962345	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.885[GIH]; 1.0[JPT]
rs7169168	intron_variant; nc_transcript_variant	0.95[CHB]; 1.0[JPT]
rs1397260	feature_truncation; intron_variant; nc_transcript_variant	0.819[CEU]
rs10520046	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2340001	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs11073139	intron_variant; nc_transcript_variant	0.82[CEU]
rs9806601	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs16962357	intron_variant; nc_transcript_variant	0.951[CHB]; 1.0[JPT]
rs4923706	intron_variant; nc_transcript_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.962[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs2102513	intron_variant; nc_transcript_variant	0.951[CHB]; 1.0[JPT]
rs9806609	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.846[GIH]; 1.0[JPT]
rs7169022	intron_variant; nc_transcript_variant	0.95[CHB]; 1.0[JPT]
rs10520047	intron_variant; nc_transcript_variant	0.837[ASW]; 1.0[CHB]; 1.0[CHD]; 0.809[GIH]; 1.0[JPT]
rs9806603	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.809[GIH]; 1.0[JPT]
rs2089740	intron_variant; nc_transcript_variant	1.0[CHB]; 0.974[CHD]; 0.846[GIH]; 1.0[JPT]
rs12906168	intron_variant; nc_transcript_variant	0.82[CEU]