SNP Report
Basic Info
Name |
rs518147
dbSNP
Ensembl
|
Location |
ChrX:113818582(Fwd) |
Variant Alleles |
G/C |
Ancestral Allele |
C |
Functional Annotation |
5_prime_UTR_variant.
|
Consequence to Transcript |
5_prime_UTR_variant(ENST00000371951; ENST00000276198; ENST00000371950) |
No. of Studies |
3 (significant: 3; non-significant: 0; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 3)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 29)
rs_ID |
Functional Annotation |
r2[population] |
rs533739
|
|
0.844[CEU]
|
rs7890739
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs493533
|
|
0.945[CEU]; 0.802[CHB]; 0.897[YRI]
|
rs498177
|
downstream_gene_variant; intron_variant |
0.901[CEU]
|
rs478209
|
|
0.949[CEU]; 0.805[CHB]; 0.861[YRI]
|
rs12558624
|
intron_variant |
0.847[YRI]
|
rs6579495
|
intron_variant |
0.842[CHB]; 0.818[JPT]
|
rs7887868
|
intron_variant; upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs498207
|
upstream_gene_variant |
0.944[CEU]; 1.0[CHB]; 1.0[JPT]; 0.949[YRI]
|
rs12855533
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs9698290
|
downstream_gene_variant; intron_variant; upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs508865
|
upstream_gene_variant |
0.945[CEU]; 0.802[CHB]; 0.8[YRI]
|
rs12847225
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs2192371
|
downstream_gene_variant; intron_variant |
1.0[CEU]
|
rs12688102
|
intron_variant |
0.949[CEU]; 0.885[CHB]; 1.0[JPT]
|
rs11798698
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs569959
|
intron_variant; upstream_gene_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.953[YRI]
|
rs543229
|
intron_variant; upstream_gene_variant |
0.847[YRI]
|
rs2192372
|
intron_variant |
1.0[CHB]; 1.0[JPT]
|
rs6579490
|
intron_variant |
0.847[YRI]
|
rs539023
|
|
0.949[CEU]; 0.805[CHB]; 0.861[YRI]
|
rs547617
|
|
0.945[CEU]; 0.802[CHB]; 0.897[YRI]
|
rs547536
|
|
0.949[CEU]; 0.805[CHB]
|
rs556677
|
intron_variant; upstream_gene_variant |
0.847[YRI]
|
rs12838742
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.828[YRI]
|
rs12854485
|
intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs7055144
|
downstream_gene_variant; intron_variant |
1.0[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs521018
|
upstream_gene_variant |
0.945[CEU]; 1.0[CHB]; 1.0[JPT]; 0.947[YRI]
|
rs5988072
|
downstream_gene_variant; intron_variant |
0.901[CEU]
|