ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs552655 dbSNP Ensembl
Location	Chr6:13370488(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000379287; ENST00000379284)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			PBAT P-value=0.004, power ranking=2 within inattentive sympt...... PBAT P-value=0.004, power ranking=2 within inattentive symptoms phenotype in dominant model More...	achieved significance within a phenotype using the PBAT scre...... achieved significance within a phenotype using the PBAT screening algorithm with various quantitative phenotypes More...	Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GFOD1	glucose-fructose oxidoreductase domain containing 1	6pter-p22.1	1(1/0/0)

Genes from other sources (count: 0)

SNPs in LD with rs552655 (count: 30) View in gBrowse (chr6:13361088..22440124 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 30)

rs_ID	Functional Annotation	r²[population]
rs476904	intron_variant	0.924[CEU]; 0.803[CHD]; 0.813[GIH]; 0.845[TSI]
rs517803	intron_variant	1.0[CEU]; 0.946[CHB]; 1.0[CHD]; 0.952[GIH]; 1.0[JPT]; 0.977[TSI]
rs548119	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2496162	3_prime_UTR_variant	0.923[CEU]
rs4711978	intron_variant	1.0[CEU]; 0.934[CHB]; 1.0[JPT]
rs2439536	intron_variant	0.924[CEU]; 0.946[CHB]; 0.875[JPT]
rs501987	intron_variant	0.923[CEU]
rs7760579	intron_variant	1.0[CEU]; 0.946[CHB]; 0.941[CHD]; 0.953[GIH]; 1.0[JPT]; 0.956[MEX]; 0.977[TSI]
rs573109	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs821277	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs564174	intron_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.912[CHD]; 0.929[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.98[MKK]; 0.954[TSI]; 1.0[YRI]
rs510932	intron_variant	1.0[CEU]; 0.876[JPT]
rs7770078	intron_variant	0.911[CEU]
rs524118	intron_variant	0.922[CEU]
rs2496160	3_prime_UTR_variant	0.924[CEU]; 0.97[CHD]; 0.838[GIH]; 0.818[JPT]; 0.911[TSI]
rs516003	intron_variant	1.0[CEU]; 1.0[CHB]; 0.941[CHD]; 0.929[GIH]; 1.0[JPT]; 1.0[MEX]; 0.862[MKK]; 0.977[TSI]
rs12153966	intron_variant	1.0[CEU]
rs9357708	intron_variant	0.959[CEU]; 0.946[CHB]; 0.937[JPT]
rs491278	intron_variant	0.922[CEU]; 0.946[CHB]; 0.937[JPT]
rs2496173	intron_variant	0.924[CEU]; 0.946[CHB]; 0.941[CHD]; 0.838[GIH]; 0.937[JPT]; 0.859[MEX]; 0.911[TSI]
rs492433	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs489396	intron_variant	0.922[CEU]; 0.944[CHB]; 0.937[JPT]
rs2496161	3_prime_UTR_variant	0.924[CEU]; 0.941[CHD]; 0.838[GIH]; 0.818[JPT]; 0.888[TSI]
rs531256	intron_variant	0.924[CEU]; 0.803[CHD]; 0.86[GIH]; 0.89[TSI]
rs575709	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs579028	intron_variant	1.0[CEU]; 0.946[CHB]; 1.0[JPT]
rs570315	intron_variant	1.0[CEU]; 1.0[CHB]; 0.856[CHD]; 0.929[GIH]; 1.0[JPT]; 1.0[MEX]; 0.862[MKK]; 0.977[TSI]
rs9367440	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs10948649		0.861[ASW]; 1.0[CEU]; 0.946[CHB]; 0.941[CHD]; 0.881[GIH]; 0.939[JPT]; 0.956[MEX]; 1.0[TSI]
rs10807431	intron_variant	1.0[CEU]; 1.0[CHB]; 0.939[JPT]