ADHDgene Database

SNP Report

Basic Info

Name	rs565977 dbSNP Ensembl
Location	Chr17:27898828(Fwd)
Variant Alleles	T/C
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000577934) downstream_gene_variant(ENST00000225394; ENST00000579050; ENST00000580132; ENST00000578073; ENST00000578266; ENST00000584522; ENST00000491377; ENST00000578670; ENST00000583940; ENST00000473217; ENST00000585148; ENST00000581348; ENST00000579937; ENST00000394869) intron_variant(ENST00000301057; ENST00000582829; ENST00000581411; ENST00000577934; ENST00000580183; ENST00000581474; ENST00000578749) nc_transcript_variant(ENST00000579674; ENST00000581474) non_coding_exon_variant(ENST00000579674) upstream_gene_variant(ENST00000378818; ENST00000307201)
No. of Studies	0 (significant: 0; non-significant: 0; trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GIT1	G protein-coupled receptor kinase interacting ArfGAP 1	17p11.2	2(1/1/0)

Approved Symbol	Approved Name	Location
TP53I13	tumor protein p53 inducible protein 13	17q11.2
ABHD15	abhydrolase domain containing 15	17q11.2

SNPs in LD with rs565977 (count: 1) View in gBrowse (chr17:27898828..27901975 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs550818	NMD_transcript_variant; downstream_gene_variant; intron_variant; missense_variant; nc_transcript_variant	2(1/1/0)	0.906[CEU]; 0.846[TSI]