ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs6565113 dbSNP Ensembl
Location	Chr16:83107646(Fwd)
Variant Alleles	G/T
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000539548) intron_variant(ENST00000566620; ENST00000268613; ENST00000565636; ENST00000431540; ENST00000428848; ENST00000539548; ENST00000569454; ENST00000446376) nc_transcript_variant(ENST00000569454)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			PBAT P-value=0.005, power ranking=1 within all symptoms phen...... PBAT P-value=0.005, power ranking=1 within all symptoms phenotype in additive model More...	achieved significance within a phenotype using the PBAT scre...... achieved significance within a phenotype using the PBAT screening algorithm with various quantitative phenotypes More...	Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
CDH13	cadherin 13, H-cadherin (heart)	16q23.3	3(1/1/1)

Genes from other sources (count: 0)

SNPs in LD with rs6565113 (count: 15) View in gBrowse (chr16:83106301..83136478 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 15)

rs_ID	Functional Annotation	r²[population]
rs4238726	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.846[MKK]
rs8059052	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs9932437	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.848[CEU]; 0.829[MEX]; 0.801[MKK]; 0.913[TSI]
rs8061985	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.96[CEU]; 0.85[GIH]; 0.952[JPT]; 0.914[MEX]; 0.934[TSI]
rs7187580	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.947[MKK]; 0.825[TSI]
rs12924791	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.872[TSI]
rs12929239	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.812[MKK]; 0.829[TSI]
rs6565115	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.846[MKK]
rs7499448	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.952[CHB]; 0.863[CHD]; 0.844[GIH]; 0.952[JPT]; 0.872[MEX]; 0.836[MKK]
rs6565114	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.848[CEU]; 0.817[LWK]; 0.896[MKK]; 0.892[TSI]
rs7192356	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.922[CEU]; 0.952[CHB]; 0.889[CHD]; 0.888[GIH]; 0.952[JPT]; 0.87[MEX]; 0.836[MKK]; 1.0[TSI]
rs4783321	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.88[CHB]; 0.944[JPT]
rs7201707	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.805[TSI]
rs3935908	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.92[CEU]; 1.0[YRI]
rs12929690	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.825[TSI]