ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs692691 dbSNP Ensembl
Location	Chr15:55760575(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000522437; ENST00000524160) intron_variant(ENST00000565113; ENST00000321149; ENST00000522437; ENST00000457155; ENST00000348518; ENST00000568310; ENST00000448430; ENST00000524160; ENST00000380679) nc_transcript_variant(ENST00000565113; ENST00000568310)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Wigg KG, 2008	G/A		TDT P-value=0.754, X²=0.098 TDT P-value=0.754, X²=0.098	no evidence for association no evidence for association	Non-significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DYX1C1	dyslexia susceptibility 1 candidate 1	15q21.1	1(0/1/0)

Genes from other sources (count: 1)

Approved Symbol	Approved Name	Location
DYX1C1-CCPG1	DYX1C1-CCPG1 readthrough (non-protein coding)	15q

SNPs in LD with rs692691 (count: 18) View in gBrowse (chr15:55574880..55777788 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 18)

rs_ID	Functional Annotation	r²[population]
rs692690	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.926[ASW]; 0.948[GIH]; 0.893[LWK]; 0.889[TSI]
rs7167572	intron_variant; nc_transcript_variant	1.0[CHB]
rs8042509	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8037376	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs7174102	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs692646	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.926[ASW]; 0.906[CEU]; 0.869[GIH]; 1.0[MEX]; 1.0[TSI]
rs687623	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[ASW]; 0.901[CEU]; 1.0[CHB]; 0.864[CHD]; 0.924[GIH]; 1.0[JPT]; 1.0[MEX]; 0.81[MKK]; 0.886[TSI]; 1.0[YRI]
rs7167170	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs4380011	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs6493787	NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[CHB]; 0.864[JPT]
rs11857862	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs17819096	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs17238297	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs17819108	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs11857139	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8043049	NMD_transcript_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs8042996	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.855[ASW]; 0.934[YRI]
rs12440680	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.901[GIH]; 0.825[MEX]