ADHDgene Database

SNP Report

Basic Info

Name	rs787554 dbSNP Ensembl
Location	Chr18:11862697(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000423027; ENST00000535980; ENST00000269162; ENST00000585642; ENST00000535121; ENST00000590228; ENST00000334049) nc_transcript_variant(ENST00000535980)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Laurin N, 2008(b)	C/T		TDT P-value=0.206, X²=1.603 TDT P-value=0.206, X²=1.603	no significant evidence of association no significant evidence of association	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
GNAL	guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type	18p11.22-p11.21	1(1/0/0)

SNPs in LD with rs787554 (count: 13) View in gBrowse (chr18:11862697..11872825 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs2848463	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.879[TSI]
rs2071139	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2848455	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs2071138	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 0.879[TSI]
rs2586214	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs787559	intron_variant; nc_transcript_variant	0.877[CHB]; 1.0[JPT]
rs2855646	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 0.856[CHD]; 0.919[GIH]; 1.0[JPT]; 0.905[MEX]; 1.0[TSI]
rs2859542	intron_variant; nc_transcript_variant	1.0[CEU]; 0.874[TSI]
rs2855639	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]
rs2586211	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 0.856[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[TSI]
rs2848465	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 0.856[CHD]; 0.896[GIH]; 1.0[JPT]; 0.905[MEX]; 1.0[TSI]
rs2071140	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CEU]
rs2848454	intron_variant; nc_transcript_variant	1.0[JPT]