ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs790531 dbSNP Ensembl
Location	Chr13:50725514(Fwd)
Variant Alleles	A/G
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000486895; ENST00000463474; ENST00000461527; ENST00000491341; ENST00000468168; ENST00000476738; ENST00000468522; ENST00000467721; ENST00000490577; ENST00000491615) nc_transcript_variant(ENST00000486895; ENST00000463474; ENST00000461527; ENST00000491341; ENST00000468168; ENST00000476738; ENST00000468522; ENST00000467721; ENST00000490577; ENST00000491615)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Stergiakouli E., 2012	G/A	G	P=0.000015, OR=1.62, 95% CI=1.30-2.02 P=0.000015, OR=1.62, 95% CI=1.30-2.02	One of the top 31 independent SNP in this ADHD GWAS. One of the top 31 independent SNP in this ADHD GWAS.	Trend

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DLEU2	deleted in lymphocytic leukemia 2 (non-protein coding)	13q14	1(0/0/1)

Genes from other sources (count: 1)

Approved Symbol	Approved Name	Location
DLEU1	deleted in lymphocytic leukemia 1 (non-protein coding)	13q14.3

SNPs in LD with rs790531 (count: 22) View in gBrowse (chr13:50532130..50734294 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 22)

rs_ID	Functional Annotation	r²[population]
rs2687934	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs790934	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2476391	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.825[CEU]; 1.0[CHB]; 1.0[JPT]
rs2687935	intron_variant; nc_transcript_variant	1.0[CHB]; 0.935[CHD]; 1.0[JPT]; 1.0[MEX]
rs2812223	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs790937	intron_variant; nc_transcript_variant; upstream_gene_variant	0.825[CEU]; 1.0[CHB]; 1.0[JPT]
rs2472395	intron_variant; nc_transcript_variant	0.825[CEU]; 1.0[CHB]; 1.0[JPT]
rs2760913	intron_variant; nc_transcript_variant	0.877[JPT]
rs790532	intron_variant; nc_transcript_variant	1.0[ASW]; 0.825[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
rs706615	intron_variant; nc_transcript_variant	0.825[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.878[MEX]; 1.0[TSI]
rs790528	intron_variant; nc_transcript_variant	0.825[CEU]; 1.0[CHB]; 0.877[JPT]; 0.941[YRI]
rs2490637		1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.878[MEX]; 1.0[TSI]
rs790530	intron_variant; nc_transcript_variant	0.825[CEU]; 1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs1798975	intron_variant; nc_transcript_variant	1.0[JPT]
rs790939	downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.825[CEU]; 1.0[CHB]; 1.0[JPT]
rs706617	intron_variant; nc_transcript_variant; upstream_gene_variant	0.825[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.942[LWK]; 0.878[MEX]; 0.833[MKK]; 1.0[TSI]; 0.88[YRI]
rs2687936	intron_variant; nc_transcript_variant	1.0[CHB]; 0.935[CHD]; 1.0[JPT]; 1.0[MEX]
rs2066550	3_prime_UTR_variant; downstream_gene_variant; intron_variant; nc_transcript_variant	0.825[CEU]; 1.0[CHB]; 1.0[JPT]
rs2490639		1.0[CHB]
rs2760912	intron_variant; nc_transcript_variant	0.877[JPT]
rs790941	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2812224	intron_variant; nc_transcript_variant; non_coding_exon_variant	0.877[JPT]