ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs8045006 dbSNP Ensembl
Location Chr16:83256273(Fwd)
Variant Alleles C/A
Ancestral Allele C
Functional Annotation NMD_transcript_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000539548)
intron_variant(ENST00000566620; ENST00000268613; ENST00000428848; ENST00000539548; ENST00000569454)
nc_transcript_variant(ENST00000569454)
No. of Studies 1 (significant: 0; non-significant: 1; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2010 (b) A:C GLM P-value=2.28E-05, meta-analysis P-value=0.000158 GLM P-value=2.28E-05, meta-analysis P-value=0.000158 One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs8045006 (count: 16) View in gBrowse (chr16:83246660..83259167 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 16)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014