SNP Report
Basic Info
Name |
rs8087266
dbSNP
Ensembl
|
Location |
Chr18:11688979(Fwd) |
Variant Alleles |
G/A |
Ancestral Allele |
A |
Functional Annotation |
5_prime_UTR_variant; upstream_gene_variant.
|
Consequence to Transcript |
5_prime_UTR_variant(ENST00000334049) upstream_gene_variant(ENST00000585590) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 17)
rs_ID |
Functional Annotation |
r2[population] |
rs16976596
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs8099016
|
intron_variant; nc_transcript_variant |
0.95[CEU]; 1.0[CHB]; 1.0[CHD]; 0.893[GIH]; 1.0[JPT]; 0.859[MEX]; 0.865[TSI]
|
rs1477484
|
intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs8099179
|
intron_variant; nc_transcript_variant |
0.948[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs9946455
|
downstream_gene_variant; intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs17515325
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs11872939
|
intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs8096345
|
intron_variant; nc_transcript_variant |
0.95[CEU]; 1.0[CHB]; 1.0[CHD]; 0.893[GIH]; 1.0[JPT]; 0.844[MEX]; 0.865[TSI]
|
rs1013459
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[CHD]; 1.0[JPT]
|
rs16976628
|
intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant |
1.0[CHD]
|
rs8099153
|
intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs9303743
|
intron_variant |
1.0[CHD]
|
rs1863122
|
intron_variant; nc_transcript_variant |
0.948[CEU]; 1.0[CHB]; 1.0[JPT]
|
rs8087897
|
intron_variant; nc_transcript_variant |
1.0[CHB]; 1.0[JPT]
|
rs9676233
|
intron_variant; nc_transcript_variant |
1.0[CHD]
|
rs17515304
|
intron_variant; nc_transcript_variant |
1.0[JPT]
|
rs4239300
|
intron_variant |
1.0[JPT]
|