ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs876477 dbSNP Ensembl
Location Chr4:21156928(Fwd)
Variant Alleles C/T
Ancestral Allele C
Functional Annotation NMD_transcript_variant; intron_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000515786)
intron_variant(ENST00000382148; ENST00000447367; ENST00000382150; ENST00000382152; ENST00000509207; ENST00000515786)
No. of Studies 2 (significant: 0; non-significant: 2; trend: 0)
Source Literature-origin

SNP related studies (count: 2)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Neale BM, 2008 T:C Uncorrected TDT P-value=2.99E-05 (OR=1.903); Corrected TDT P...... Uncorrected TDT P-value=2.99E-05 (OR=1.903); Corrected TDT P-value=2.69E-05 (OR=1.903) More... One of top 25 results in both uncorrected and corrected TDT ...... One of top 25 results in both uncorrected and corrected TDT test More... Non-significant
Lantieri F, 2010 T:C Binomial P-value=0.29, OR=1.16 for whole sample; Binomial P-...... Binomial P-value=0.29, OR=1.16 for whole sample; Binomial P-value=0.5, OR=1.05 for C-subtype More... no significant association no significant association Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs876477 (count: 31) View in gBrowse (chr4:21057794..21206490 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 31)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014