SNP Report
Basic Info
Name |
rs890
dbSNP
Ensembl
|
Location |
Chr12:13715308(Fwd) |
Variant Alleles |
A/C |
Ancestral Allele |
A |
Functional Annotation |
3_prime_UTR_variant.
|
Consequence to Transcript |
3_prime_UTR_variant(ENST00000279593) |
No. of Studies |
1 (significant: 0; non-significant: 1; trend: 0) |
Source |
Literature-origin
|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 11)
rs_ID |
Functional Annotation |
r2[population] |
rs12582975
|
intron_variant; nc_transcript_variant |
0.813[JPT]
|
rs3026173
|
downstream_gene_variant |
0.904[JPT]
|
rs12580557
|
intron_variant; nc_transcript_variant |
0.813[JPT]
|
rs4522263
|
downstream_gene_variant |
0.904[CHD]; 0.904[JPT]
|
rs17820659
|
intron_variant; nc_transcript_variant |
0.813[JPT]
|
rs12814951
|
downstream_gene_variant |
1.0[ASW]; 1.0[CHB]; 0.952[CHD]; 0.973[GIH]; 0.91[JPT]; 1.0[LWK]; 0.871[MEX]; 0.857[MKK]; 0.826[TSI]; 1.0[YRI]
|
rs1806192
|
intron_variant |
0.904[CHD]; 0.904[JPT]
|
rs10772692
|
intron_variant |
0.883[CEU]; 0.801[GIH]; 0.956[MEX]; 0.871[TSI]
|
rs2268092
|
intron_variant |
0.952[CHD]; 0.904[JPT]
|
rs1806213
|
intron_variant |
0.95[CHD]; 0.904[JPT]
|
rs1806202
|
intron_variant |
0.95[CHD]; 0.904[JPT]
|