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ADHDgene Database
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Keyword:
Type:
SNP
Gene
Region
Pathway
Study(PMID)
Large-scale studies
Genome-wide Association Studies of ADHD
Genome-wide Linkage Studies of ADHD
Genome-wide CNV Analyses of ADHD
Meta-analysis Studies of ADHD
Data Summary
Published Variant
SNP:
1391
CNV:
398
Others:
173
Published Gene:
359
Published Region:
128
Pathway by PBA:
8
Study:
361
Detail ...
SNP Report
Basic Info
Name
rs913000
dbSNP
Ensembl
Location
Chr20:54836354(Fwd)
Variant Alleles
T/C
Ancestral Allele
A
No. of Studies
1 (significant: 0; non-significant: 1; trend: 0)
Source
Literature-origin
SNP related studies (count: 1)
Reference
Allele Change
Risk Allele
Statistical Values
Author Comments
Result of Statistical Analysis
Neale BM, 2010 (b)
T:C
GLM P-value=3.34E-05, meta-analysis P-value=0.1422
GLM P-value=3.34E-05, meta-analysis P-value=0.1422
One of the top 100 SNPs from imputed IMAGE II dataset
One of the top 100 SNPs from imputed IMAGE II dataset
Non-significant
SNP related genes (count: 0)
SNPs in LD with rs913000 (count: 14)
View in gBrowse (chr20:54831122..54848289 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold
r
2
>=0.8.
Literature-origin SNPs (count: 3)
rs_ID
Functional Annotation
#studies(significant/non-significant/trend)
r
2
[population]
rs1326021
nc_transcript_variant; non_coding_exon_variant
1(0/1/0)
0.864[CEU]; 0.829[MEX]; 0.883[TSI]
rs1326022
nc_transcript_variant; non_coding_exon_variant
1(0/1/0)
0.822[CEU]; 0.829[MEX]; 0.883[TSI]
rs6014657
1(0/0/1)
0.888[CHB]; 1.0[CHD]; 1.0[JPT]
LD-proxies (count: 11)
rs_ID
Functional Annotation
r
2
[population]
rs1326023
upstream_gene_variant
0.864[CEU]
rs6069675
1.0[CHB]; 1.0[JPT]; 0.823[TSI]; 0.814[YRI]
rs6099060
1.0[JPT]
rs1409224
upstream_gene_variant
0.864[CEU]
rs912998
1.0[CHB]; 1.0[JPT]
rs913002
1.0[CHB]; 1.0[JPT]
rs6099065
downstream_gene_variant
0.894[CEU]
rs2094183
downstream_gene_variant
0.861[CEU]
rs6014658
0.888[CHB]; 1.0[JPT]
rs913001
1.0[CHB]; 1.0[JPT]
rs912999
1.0[CHB]; 1.0[JPT]