ADHDgene Database

SNP Report

Basic Info

Name	rs930421 dbSNP Ensembl
Location	Chr2:42981239(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript	3_prime_UTR_variant(ENST00000405592; ENST00000406652) downstream_gene_variant(ENST00000409019; ENST00000405094; ENST00000467925)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Lasky-Su J, 2008			P-value=5.64E-06 under Recessive model for FBAT-PC all sympt...... P-value=5.64E-06 under Recessive model for FBAT-PC all symptoms More...	association finding with P-value association finding with P-value	Trend

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
OXER1	oxoeicosanoid (OXE) receptor 1	2p22.1	1(0/0/1)

Approved Symbol	Approved Name	Location
MTA3	metastasis associated 1 family, member 3	2p22.1

SNPs in LD with rs930421 (count: 5) View in gBrowse (chr2:42973439..42987268 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs11681208	downstream_gene_variant	0.883[CEU]; 0.928[CHB]; 0.811[JPT]
rs13389948	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.928[CHB]; 0.826[GIH]; 0.829[LWK]; 0.831[MEX]
rs10205149	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.928[CHB]; 0.904[JPT]
rs930420	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.928[CHB]; 0.807[CHD]; 0.847[GIH]; 0.867[LWK]
rs10185815	NMD_transcript_variant; intron_variant; nc_transcript_variant	0.857[CHB]; 0.845[CHD]; 0.806[GIH]