ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs9384245 dbSNP Ensembl
Location	Chr6:155160128(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	downstream_gene_variant; intron_variant; nc_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000367178; ENST00000417268; ENST00000367186) intron_variant(ENST00000461783; ENST00000460692; ENST00000535064) nc_transcript_variant(ENST00000460692; ENST00000535064)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Stergiakouli E., 2012	T/C	T	P=0.00003, OR=0.77, 95% CI=0.68-0.87 P=0.00003, OR=0.77, 95% CI=0.68-0.87	One of the top 37 independent SNP in this ADHD GWAS. One of the top 37 independent SNP in this ADHD GWAS.	Trend

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
TIAM2	T-cell lymphoma invasion and metastasis 2	6q25	1(0/0/1)

Genes from other sources (count: 1)

Approved Symbol	Approved Name	Location
SCAF8	SR-related CTD-associated factor 8	6q25.1-q25.3

SNPs in LD with rs9384245 (count: 59) View in gBrowse (chr6:155029064..155221284 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 59)

rs_ID	Functional Annotation	r²[population]
rs7740797	intron_variant	1.0[CHB]; 1.0[JPT]
rs4869833	intron_variant; nc_transcript_variant	0.904[CHB]; 1.0[JPT]
rs12202939	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CHB]; 0.817[CHD]; 0.834[MEX]; 0.888[TSI]
rs7752180	intron_variant; nc_transcript_variant	0.942[ASW]; 0.96[CEU]; 1.0[CHB]; 0.944[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.817[MKK]; 1.0[TSI]; 1.0[YRI]
rs9397745	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs7760792	intron_variant; nc_transcript_variant	1.0[JPT]
rs7752542		1.0[CHB]; 0.941[CHD]; 0.847[GIH]; 1.0[JPT]; 0.957[MEX]
rs9397202	intron_variant; nc_transcript_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs7744890	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10485354	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs9397744	intron_variant; nc_transcript_variant	0.942[ASW]; 0.96[CEU]; 1.0[CHB]; 0.944[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.953[MKK]; 1.0[TSI]; 1.0[YRI]
rs12528403	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs9479954	intron_variant; nc_transcript_variant	1.0[CHB]; 0.944[CHD]; 0.831[GIH]; 1.0[JPT]; 0.916[MEX]
rs3087697	intron_variant	0.942[ASW]; 0.96[CEU]; 1.0[CHB]; 0.944[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.861[MKK]; 1.0[TSI]; 1.0[YRI]
rs9322480	intron_variant	0.886[CEU]; 1.0[CHB]; 1.0[JPT]
rs9478582	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2351845	intron_variant; upstream_gene_variant	1.0[CHB]; 0.825[CHD]; 1.0[JPT]; 0.878[MEX]; 0.933[TSI]
rs4870317	intron_variant; nc_transcript_variant	0.904[CHB]; 1.0[JPT]
rs4870310	downstream_gene_variant	0.84[CEU]; 0.824[CHB]
rs3800006	intron_variant; nc_transcript_variant	0.886[CEU]; 1.0[CHB]; 0.826[CHD]; 0.91[GIH]; 0.957[MEX]; 1.0[TSI]
rs9479959	intron_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs7761794	intron_variant; nc_transcript_variant	0.904[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs9384238	intron_variant; nc_transcript_variant	1.0[CHB]; 0.817[CHD]; 1.0[JPT]; 0.875[MEX]; 0.955[TSI]
rs7770922	intron_variant; nc_transcript_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs911191	intron_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs7762129	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs12523716	downstream_gene_variant; intron_variant; nc_transcript_variant	0.886[CEU]; 1.0[CHB]; 1.0[JPT]; 0.915[MEX]; 1.0[TSI]
rs1980602	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[JPT]
rs4292533		1.0[CHB]
rs13202898	intron_variant; nc_transcript_variant	0.904[CHB]
rs9479956	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs3828933	upstream_gene_variant	0.96[CEU]; 1.0[CHB]; 0.944[CHD]; 0.867[GIH]; 1.0[JPT]; 0.818[LWK]; 0.957[MEX]; 0.872[TSI]; 0.894[YRI]
rs9371824	downstream_gene_variant	0.843[CEU]
rs9478586	intron_variant	1.0[CHB]; 0.944[CHD]; 0.93[GIH]; 1.0[JPT]; 0.956[MEX]
rs9397747	intron_variant; nc_transcript_variant	0.884[ASW]; 0.96[CEU]; 1.0[CHB]; 0.884[CHD]; 1.0[GIH]; 1.0[JPT]; 0.977[LWK]; 1.0[MEX]; 0.808[MKK]; 1.0[TSI]; 0.964[YRI]
rs10872710	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]; 0.872[MEX]; 0.955[TSI]
rs12199781	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs7766968	intron_variant	1.0[CHB]; 0.944[CHD]; 0.93[GIH]; 1.0[JPT]; 0.829[MEX]
rs3800002	intron_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.875[MEX]; 0.955[TSI]
rs3757291	intron_variant	1.0[CHB]; 0.824[CHD]; 1.0[JPT]; 0.872[MEX]; 0.954[TSI]
rs6911728	intron_variant; nc_transcript_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs9371351	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs6932758		0.886[CEU]; 0.904[CHB]; 0.826[CHD]; 1.0[JPT]; 0.957[MEX]; 0.872[TSI]
rs2351848	intron_variant	1.0[CHB]; 0.817[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs9322477	intron_variant; nc_transcript_variant	1.0[CHB]; 0.944[CHD]; 0.93[GIH]; 1.0[JPT]; 1.0[MEX]
rs7753068	intron_variant; nc_transcript_variant	0.824[CHB]; 1.0[JPT]
rs7744421	intron_variant; nc_transcript_variant	0.884[CEU]; 1.0[CHB]; 0.817[CHD]; 0.863[GIH]; 1.0[JPT]; 0.957[MEX]; 1.0[TSI]
rs9322476	intron_variant; nc_transcript_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.933[TSI]
rs6940633	downstream_gene_variant; intron_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.875[MEX]; 0.955[TSI]
rs9478583	intron_variant; nc_transcript_variant	1.0[CHB]; 0.884[CHD]; 0.826[GIH]; 1.0[JPT]; 0.956[MEX]
rs9384241	intron_variant; nc_transcript_variant	1.0[CHB]; 0.875[MEX]; 0.955[TSI]
rs12201149	downstream_gene_variant; intron_variant; nc_transcript_variant	0.939[ASW]; 0.842[CEU]; 1.0[CHB]; 1.0[CHD]; 0.954[GIH]; 1.0[JPT]; 0.977[LWK]; 0.869[MKK]; 0.911[TSI]; 0.964[YRI]
rs9397749	intron_variant; nc_transcript_variant	1.0[CHB]; 0.817[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs6925900	intron_variant	1.0[CHB]; 0.826[CHD]; 1.0[JPT]; 0.878[MEX]; 0.955[TSI]
rs3800005	intron_variant; nc_transcript_variant	0.942[ASW]; 0.956[CEU]; 1.0[CHB]; 0.888[CHD]; 0.907[GIH]; 0.977[LWK]; 0.912[MEX]; 0.87[TSI]; 0.963[YRI]
rs9371352	intron_variant	0.942[ASW]; 0.96[CEU]; 1.0[CHB]; 0.944[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.848[MKK]; 1.0[TSI]; 1.0[YRI]
rs13196046	downstream_gene_variant; intron_variant; nc_transcript_variant	1.0[JPT]
rs4870312	intron_variant	0.843[CEU]; 1.0[CHB]; 1.0[JPT]; 0.963[YRI]
rs9375	3_prime_UTR_variant; intron_variant; nc_transcript_variant	0.96[CEU]