ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs9842394 dbSNP Ensembl
Location Chr3:179613236(Fwd)
Variant Alleles C/T
Ancestral Allele C
Functional Annotation intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000467460; ENST00000485199; ENST00000472994; ENST00000464614; ENST00000468741; ENST00000465751; ENST00000476138; ENST00000263962; ENST00000491640; ENST00000469198; ENST00000496721; ENST00000463761; ENST00000487198; ENST00000392649)
nc_transcript_variant(ENST00000487198)
upstream_gene_variant(ENST00000462801)
No. of Studies 1 (significant: 0; non-significant: 0; trend: 1)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Stergiakouli E., 2012 T/C T P=0.0000268, OR=0.77, 95% CI=0.69-0.87 P=0.0000268, OR=0.77, 95% CI=0.69-0.87 One of the top 33 independent SNP in this ADHD GWAS. One of the top 33 independent SNP in this ADHD GWAS. Trend

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs9842394 (count: 11) View in gBrowse (chr3:179592240..179661318 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 11)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014