SNP Report
Basic Info
Name |
rs10784944
dbSNP
Ensembl
|
Location |
Chr12:72359418(Fwd) |
Variant Alleles |
C/G |
Ancestral Allele |
G |
Functional Annotation |
downstream_gene_variant; intron_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000546576) intron_variant(ENST00000333850) |
No. of Studies |
0 (significant: 0; non-significant: 0; trend: 0) |
Source |
LD-proxy
|
SNP related studies (count: 0)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 13)
|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs7963226
|
intron_variant |
1(1/0/0)
|
0.916[ASW]; 0.913[CEU]; 0.846[CHB]; 0.846[CHD]; 0.871[GIH]; 1.0[LWK]; 1.0[MKK]; 1.0[TSI]; 1.0[YRI]
|
rs1007023
|
intron_variant |
1(1/0/0)
|
0.835[ASW]; 0.913[CEU]; 1.0[CHB]; 0.846[CHD]; 0.871[GIH]; 1.0[MEX]; 0.835[MKK]; 0.96[TSI]; 0.856[YRI]
|
rs6582081
|
intron_variant |
1(1/0/0)
|
0.831[CEU]; 0.846[CHB]; 0.846[CHD]; 0.871[GIH]; 0.851[MEX]; 1.0[TSI]
|
rs7954568
|
intron_variant |
1(1/0/0)
|
0.906[CEU]; 1.0[CHB]
|
rs1386494
|
NMD_transcript_variant; intron_variant |
1(0/1/0)
|
1.0[CEU]; 1.0[CHB]; 1.0[JPT]; 0.815[YRI]
|
rs1386496
|
NMD_transcript_variant; intron_variant |
2(0/2/0)
|
0.83[ASW]; 1.0[CEU]; 1.0[CHB]; 0.846[CHD]; 0.871[GIH]; 1.0[MEX]; 1.0[TSI]
|
rs4760814
|
intron_variant |
1(0/1/0)
|
0.913[CEU]; 1.0[CHB]; 1.0[YRI]
|
rs6582072
|
NMD_transcript_variant; intron_variant |
1(0/1/0)
|
0.847[CEU]
|
rs4760818
|
intron_variant |
2(1/1/0)
|
0.915[ASW]; 0.913[CEU]; 0.823[CHB]; 0.807[GIH]; 1.0[MEX]; 0.893[MKK]; 0.856[YRI]
|
rs1386497
|
intron_variant |
2(1/1/0)
|
0.849[ASW]; 0.913[CEU]; 0.846[CHB]; 0.925[MEX]; 0.893[TSI]; 0.856[YRI]
|
rs1843809
|
NMD_transcript_variant; intron_variant |
5(3/2/0)
|
1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.859[MEX]; 1.0[TSI]
|
rs1386488
|
NMD_transcript_variant; intron_variant |
2(0/2/0)
|
0.847[CEU]
|
rs1386493
|
NMD_transcript_variant; intron_variant |
4(2/2/0)
|
0.847[CEU]
|
LD-proxies (count: 0)