SNP Report
Basic Info
Name |
rs1487281
dbSNP
Ensembl
|
Location |
Chr12:72380022(Fwd) |
Variant Alleles |
G/T |
Ancestral Allele |
T |
Functional Annotation |
intron_variant.
|
Consequence to Transcript |
intron_variant(ENST00000333850) |
No. of Studies |
0 (significant: 0; non-significant: 0; trend: 0) |
Source |
LD-proxy
|
SNP related studies (count: 0)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.
Literature-origin SNPs (count: 11)
|
rs_ID |
Functional Annotation |
#studies(significant/non-significant/trend) |
r2[population] |
rs1007023
|
intron_variant |
1(1/0/0)
|
0.835[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 0.859[MEX]; 0.96[TSI]
|
rs6582081
|
intron_variant |
1(1/0/0)
|
0.913[CEU]; 0.846[CHB]; 1.0[CHD]; 1.0[GIH]; 0.86[MEX]; 1.0[TSI]
|
rs7963226
|
intron_variant |
1(1/0/0)
|
0.916[ASW]; 1.0[CEU]; 0.846[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[TSI]
|
rs1843809
|
NMD_transcript_variant; intron_variant |
5(3/2/0)
|
0.913[CEU]; 1.0[CHB]; 0.846[CHD]; 0.883[GIH]; 1.0[TSI]
|
rs4760814
|
intron_variant |
1(0/1/0)
|
1.0[CEU]; 1.0[CHB]
|
rs1386497
|
intron_variant |
2(1/1/0)
|
0.849[ASW]; 1.0[CEU]; 0.846[CHB]; 0.917[CHD]; 0.8[MEX]; 0.893[TSI]
|
rs1487276
|
intron_variant |
1(1/0/0)
|
0.838[CEU]
|
rs7954568
|
intron_variant |
1(1/0/0)
|
1.0[CEU]; 1.0[CHB]
|
rs4760818
|
intron_variant |
2(1/1/0)
|
0.915[ASW]; 1.0[CEU]; 0.823[CHB]; 0.935[GIH]; 0.865[MEX]
|
rs1386494
|
NMD_transcript_variant; intron_variant |
1(0/1/0)
|
0.913[CEU]; 1.0[CHB]
|
rs1386496
|
NMD_transcript_variant; intron_variant |
2(0/2/0)
|
0.83[ASW]; 0.913[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 0.865[MEX]; 1.0[TSI]
|
LD-proxies (count: 0)