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ADHDgene Database
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Keyword:
Type:
SNP
Gene
Region
Pathway
Study(PMID)
Large-scale studies
Genome-wide Association Studies of ADHD
Genome-wide Linkage Studies of ADHD
Genome-wide CNV Analyses of ADHD
Meta-analysis Studies of ADHD
Data Summary
Published Variant
SNP:
1391
CNV:
398
Others:
173
Published Gene:
359
Published Region:
128
Pathway by PBA:
8
Study:
361
Detail ...
SNP Report
Basic Info
Name
rs1948773
dbSNP
Ensembl
Location
Chr16:55746946(Fwd)
Variant Alleles
A/C
Ancestral Allele
A
No. of Studies
1 (significant: 0; non-significant: 1; trend: 0)
Source
Literature-origin
SNP related studies (count: 1)
Reference
Allele Change
Risk Allele
Statistical Values
Author Comments
Result of Statistical Analysis
Kim JW, 2008
X
2
=0.22, P-value=0.639, OR=1.08
X
2
=0.22, P-value=0.639, OR=1.08
not associated with ADHD
not associated with ADHD
Non-significant
SNP related genes (count: 1)
Literature-origin genes (count: 1)
Approved Symbol
Approved Name
Location
No. of Studies (significant/non-significant/trend)
NET1
neuroepithelial cell transforming 1
10p15
0
Genes from other sources
(count: 0)
SNPs in LD with rs1948773 (count: 25)
View in gBrowse (chr16:55732620..55790886 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold
r
2
>=0.8.
Literature-origin SNPs (count: 2)
rs_ID
Functional Annotation
#studies(significant/non-significant/trend)
r
2
[population]
rs42460
3_prime_UTR_variant; downstream_gene_variant; intron_variant
1(0/1/0)
0.867[CHD]; 0.85[JPT]; 0.889[MEX]
rs36009
downstream_gene_variant; intron_variant; upstream_gene_variant
3(1/2/0)
0.825[YRI]
LD-proxies (count: 23)
rs_ID
Functional Annotation
r
2
[population]
rs17841334
intron_variant; nc_transcript_variant
1.0[CHB]; 0.966[CHD]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs9938863
intron_variant; nc_transcript_variant
1.0[CHB]; 0.966[CHD]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs13333562
upstream_gene_variant
0.913[CEU]; 1.0[CHB]; 0.966[CHD]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
rs4784562
intron_variant; nc_transcript_variant
0.847[JPT]
rs2894949
downstream_gene_variant
0.911[CHB]
rs9936369
intron_variant; nc_transcript_variant
0.805[JPT]
rs13338546
intron_variant; nc_transcript_variant
1.0[CHB]; 0.966[CHD]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs1807210
intron_variant; nc_transcript_variant
1.0[CHB]; 0.965[CHD]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs6499775
upstream_gene_variant
0.864[TSI]
rs9937209
intron_variant; nc_transcript_variant
1.0[CHB]; 0.848[JPT]
rs36007
intron_variant
0.825[YRI]
rs8047963
upstream_gene_variant
0.889[MEX]; 0.847[TSI]
rs11862079
intron_variant; nc_transcript_variant
0.834[CHB]; 0.814[CHD]; 0.805[JPT]
rs4322661
intron_variant; nc_transcript_variant
1.0[CHB]; 0.915[JPT]
rs2397775
0.913[CEU]; 1.0[CHB]; 0.966[CHD]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
rs13337406
upstream_gene_variant
0.899[CEU]; 1.0[CHB]; 1.0[JPT]
rs13335642
intron_variant; nc_transcript_variant
0.834[CHB]; 0.915[JPT]
rs8055528
upstream_gene_variant
0.889[MEX]; 0.847[TSI]
rs9928481
intron_variant; nc_transcript_variant
1.0[CHB]; 0.927[JPT]
rs9937399
intron_variant; nc_transcript_variant
1.0[CHB]; 0.933[CHD]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs9939593
intron_variant; nc_transcript_variant
1.0[CHB]; 0.966[CHD]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs4784563
intron_variant; nc_transcript_variant
0.805[JPT]
rs168923
intron_variant; nc_transcript_variant
1.0[CHB]; 0.92[JPT]