ADHDgene Database

SNP Report

Basic Info

Name	rs2148004 dbSNP Ensembl
Location	Chr13:42697839(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000261491; ENST00000337343; ENST00000540693; ENST00000379274)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Weber H, 2011	G/A		Nominal P-value=0.152 Nominal P-value=0.152	associated with ADHD at nominal level associated with ADHD at nominal level	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DGKH	diacylglycerol kinase, eta	13q13.3	1(1/0/0)

SNPs in LD with rs2148004 (count: 14) View in gBrowse (chr13:42685989..42741873 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs9525584	intron_variant; nc_transcript_variant	1(0/1/0)	0.944[CHB]; 0.881[CHD]; 0.896[JPT]

rs_ID	Functional Annotation	r²[population]
rs9562380	intron_variant	0.94[CHB]; 0.896[JPT]
rs7983995	intron_variant; upstream_gene_variant	0.944[CHB]; 0.896[JPT]
rs9533002	intron_variant	0.959[CEU]; 1.0[CHB]; 1.0[JPT]; 0.825[YRI]
rs9533015	intron_variant; nc_transcript_variant; upstream_gene_variant	0.944[CHB]; 0.896[JPT]
rs9566931	intron_variant; nc_transcript_variant; upstream_gene_variant	0.943[CHB]; 0.895[JPT]
rs9533020	intron_variant; nc_transcript_variant	0.943[CHB]; 0.91[CHD]; 0.896[JPT]
rs9315894	intron_variant; nc_transcript_variant	0.944[CHB]; 0.91[CHD]; 0.896[JPT]
rs7327259	intron_variant; upstream_gene_variant	0.939[CHB]; 0.896[JPT]
rs10459372	intron_variant; nc_transcript_variant	0.941[CHB]; 0.876[JPT]
rs7329683	intron_variant; nc_transcript_variant	0.941[CHB]; 0.896[JPT]
rs9533019	intron_variant; nc_transcript_variant	0.944[CHB]; 0.896[JPT]
rs1555819	intron_variant; nc_transcript_variant	0.944[CHB]; 0.896[JPT]
rs9525576	intron_variant	0.815[ASW]; 0.959[CEU]; 0.944[CHB]; 0.941[CHD]; 1.0[GIH]; 1.0[JPT]; 0.924[MKK]; 1.0[TSI]; 0.825[YRI]