ADHDgene Database

SNP Report

Basic Info

Name	rs9525584 dbSNP Ensembl
Location	Chr13:42734894(Fwd)
Variant Alleles	T/C
Ancestral Allele	T
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000337343; ENST00000379274; ENST00000498255; ENST00000261491; ENST00000538674; ENST00000536612; ENST00000540693) nc_transcript_variant(ENST00000498255)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Weber H, 2011	C/T		Nominal P-value=0.083 Nominal P-value=0.083	associated with ADHD at nominal level associated with ADHD at nominal level	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DGKH	diacylglycerol kinase, eta	13q13.3	1(1/0/0)

SNPs in LD with rs9525584 (count: 21) View in gBrowse (chr13:42685989..42741873 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs2148004	intron_variant	1(0/1/0)	0.944[CHB]; 0.881[CHD]; 0.896[JPT]
rs994856	intron_variant; upstream_gene_variant	1(1/0/0)	0.822[CEU]

rs_ID	Functional Annotation	r²[population]
rs9562380	intron_variant	0.848[CEU]; 1.0[CHB]; 1.0[JPT]
rs9533007	intron_variant; upstream_gene_variant	1.0[CEU]; 0.955[TSI]
rs1886811	intron_variant; nc_transcript_variant	0.822[CEU]
rs9533015	intron_variant; nc_transcript_variant; upstream_gene_variant	0.851[CEU]; 1.0[CHB]; 1.0[JPT]
rs7983995	intron_variant; upstream_gene_variant	0.854[CEU]; 1.0[CHB]; 1.0[JPT]
rs3742261	intron_variant; splice_region_variant	0.822[CEU]
rs7329683	intron_variant; nc_transcript_variant	0.882[CEU]; 1.0[CHB]; 1.0[JPT]
rs9533020	intron_variant; nc_transcript_variant	0.854[CEU]; 1.0[CHB]; 0.97[CHD]; 1.0[JPT]
rs10459372	intron_variant; nc_transcript_variant	0.854[CEU]; 1.0[CHB]; 1.0[JPT]
rs9525576	intron_variant	0.892[CHB]; 0.822[CHD]; 0.904[JPT]
rs7327259	intron_variant; upstream_gene_variant	0.845[CEU]; 1.0[CHB]; 1.0[JPT]
rs965256	intron_variant; nc_transcript_variant	0.822[CEU]
rs1555819	intron_variant; nc_transcript_variant	0.852[CEU]; 1.0[CHB]; 1.0[JPT]
rs9533002	intron_variant	0.947[CHB]; 0.904[JPT]
rs619659	intron_variant	1.0[CEU]
rs4624054	intron_variant; nc_transcript_variant	0.822[CEU]
rs9315894	intron_variant; nc_transcript_variant	0.854[CEU]; 1.0[CHB]; 0.97[CHD]; 1.0[JPT]
rs9566931	intron_variant; nc_transcript_variant; upstream_gene_variant	0.854[CEU]; 1.0[CHB]; 1.0[JPT]
rs9533019	intron_variant; nc_transcript_variant	0.854[CEU]; 1.0[CHB]; 1.0[JPT]